GO241472

Overview
NameGO241472
Unique NameGO241472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig59 contig Csv1_Contig59:1..508. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241472 vs. ExPASy Swiss-Prot
Match: ZB14_MAIZE (14 kDa zinc-binding protein OS=Zea mays GN=ZBP14 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.948e-35
Identity = 53/65 (81.54%), Postives = 59/65 (90.77%), Query Frame = 1
Query:  262 PTIFDKIIAKEIPSSIVYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDILGHLL 456
            PTIFDKII KEIPS++VYEDEKVLAFRDINPQAP H+LIIPK +DGLT LAKAE RH +ILG+LL
Sbjct:   16 PTIFDKIIKKEIPSTVVYEDEKVLAFRDINPQAPTHILIIPKVKDGLTGLAKAEERHIEILGYLL 80          

HSP 2 Score: 58.9214 bits (141), Expect = 3.948e-35
Identity = 23/35 (65.71%), Postives = 32/35 (91.43%), Query Frame = 3
Query:  465 KIVAEKEGILDGFRVVINNGPGACQSVYHLHLHVL 569
            K+VA++EG+ DG+RVVIN+GP  CQSVYH+H+H+L
Sbjct:   84 KVVAKQEGLEDGYRVVINDGPSGCQSVYHIHVHLL 118          
BLAST of GO241472 vs. ExPASy Swiss-Prot
Match: ZB14_BRAJU (14 kDa zinc-binding protein (Fragment) OS=Brassica juncea PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.890e-31
Identity = 49/64 (76.56%), Postives = 55/64 (85.94%), Query Frame = 1
Query:  265 TIFDKIIAKEIPSSIVYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDILGHLL 456
            TIF KII+KEIPS++VYED+KVLAFRDI PQ PVH+L+IPK RDGLT L KAE RH DILG LL
Sbjct:    2 TIFGKIISKEIPSTVVYEDDKVLAFRDITPQGPVHILLIPKVRDGLTGLFKAEERHIDILGRLL 65          

HSP 2 Score: 55.8398 bits (133), Expect = 1.890e-31
Identity = 21/35 (60.00%), Postives = 32/35 (91.43%), Query Frame = 3
Query:  465 KIVAEKEGILDGFRVVINNGPGACQSVYHLHLHVL 569
            K+VA++EG+ +GFR+VIN+GP  CQSVYH+H+H++
Sbjct:   69 KLVAKQEGLDEGFRIVINDGPQGCQSVYHIHVHLI 103          
BLAST of GO241472 vs. ExPASy Swiss-Prot
Match: HINT2_BOVIN (Histidine triad nucleotide-binding protein 2, mitochondrial OS=Bos taurus GN=HINT2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.474e-19
Identity = 32/65 (49.23%), Postives = 47/65 (72.31%), Query Frame = 1
Query:  262 PTIFDKIIAKEIPSSIVYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDILGHLL 456
            PTIF +I+ + +P+ I+YED++ LAFRD+ PQAPVH L+IPK    +  +++AE     +LGHLL
Sbjct:   53 PTIFSRILDRSLPADILYEDQQCLAFRDVAPQAPVHFLVIPK--KPIPRISQAEEEDQQLLGHLL 115          

HSP 2 Score: 46.9802 bits (110), Expect = 1.474e-19
Identity = 21/35 (60.00%), Postives = 27/35 (77.14%), Query Frame = 3
Query:  465 KIVAEKEGILDGFRVVINNGPGACQSVYHLHLHVL 569
            K  A+ EG+ DG+R+VIN+G    QSVYHLH+HVL
Sbjct:  119 KETAKAEGLGDGYRLVINDGKLGAQSVYHLHIHVL 153          
BLAST of GO241472 vs. ExPASy Swiss-Prot
Match: HINT2_HUMAN (Histidine triad nucleotide-binding protein 2, mitochondrial OS=Homo sapiens GN=HINT2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.918e-19
Identity = 32/65 (49.23%), Postives = 46/65 (70.77%), Query Frame = 1
Query:  262 PTIFDKIIAKEIPSSIVYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDILGHLL 456
            PTIF +I+ K +P+ I+YED++ L FRD+ PQAPVH L+IPK    +  +++AE     +LGHLL
Sbjct:   53 PTIFSRILDKSLPADILYEDQQCLVFRDVAPQAPVHFLVIPK--KPIPRISQAEEEDQQLLGHLL 115          

HSP 2 Score: 46.9802 bits (110), Expect = 1.918e-19
Identity = 21/35 (60.00%), Postives = 27/35 (77.14%), Query Frame = 3
Query:  465 KIVAEKEGILDGFRVVINNGPGACQSVYHLHLHVL 569
            K  A+ EG+ DG+R+VIN+G    QSVYHLH+HVL
Sbjct:  119 KQTAKAEGLGDGYRLVINDGKLGAQSVYHLHIHVL 153          
BLAST of GO241472 vs. ExPASy Swiss-Prot
Match: YHIT_SYNY3 (Uncharacterized HIT-like protein slr1234 OS=Synechocystis sp. (strain PCC 6803) GN=slr1234 PE=4 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.002e-19
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 1
Query:  265 TIFDKIIAKEIPSSIVYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDILGHLL 456
            TIF KII +EIP++IVYED+  LAF+D+NPQAPVHVL+IPK    L  L+ A      +LGHLL
Sbjct:    5 TIFSKIIRREIPAAIVYEDDLCLAFKDVNPQAPVHVLLIPK--KPLPQLSAATPEDHALLGHLL 66          

HSP 2 Score: 42.743 bits (99), Expect = 2.002e-19
Identity = 21/35 (60.00%), Postives = 25/35 (71.43%), Query Frame = 3
Query:  465 KIVAEKEGILDGFRVVINNGPGACQSVYHLHLHVL 569
            K VA   GI D FR+VINNG    Q+V+HLHLH+L
Sbjct:   70 KEVAADLGIGDQFRLVINNGAEVGQTVFHLHLHIL 104          
BLAST of GO241472 vs. ExPASy Swiss-Prot
Match: HINT2_MOUSE (Histidine triad nucleotide-binding protein 2, mitochondrial OS=Mus musculus GN=Hint2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.244e-19
Identity = 31/65 (47.69%), Postives = 46/65 (70.77%), Query Frame = 1
Query:  262 PTIFDKIIAKEIPSSIVYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDILGHLL 456
            PTIF +I+ + +P+ I+YED++ L FRD+ PQAPVH L+IP  R  +  +++AE     +LGHLL
Sbjct:   53 PTIFSRILDRSLPADILYEDQQCLVFRDVAPQAPVHFLVIP--RKPIPRISQAEEDDQQLLGHLL 115          

HSP 2 Score: 48.1358 bits (113), Expect = 3.244e-19
Identity = 19/35 (54.29%), Postives = 28/35 (80.00%), Query Frame = 3
Query:  465 KIVAEKEGILDGFRVVINNGPGACQSVYHLHLHVL 569
            K +A+ +G+ DG+R+V+N+G    QSVYHLH+HVL
Sbjct:  119 KKIAQAQGLKDGYRLVVNDGKMGAQSVYHLHIHVL 153          
BLAST of GO241472 vs. ExPASy Swiss-Prot
Match: HINT_CAEEL (Histidine triad nucleotide-binding protein 1 OS=Caenorhabditis elegans GN=hint-1 PE=2 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 4.566e-18
Identity = 30/64 (46.88%), Postives = 44/64 (68.75%), Query Frame = 1
Query:  265 TIFDKIIAKEIPSSIVYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDILGHLL 456
            T+F KII KEIP+ I++ED++ LAF D++PQAP+H L+IPK R  +  L  A      ++G L+
Sbjct:   21 TLFGKIIRKEIPAKIIFEDDEALAFHDVSPQAPIHFLVIPKRR--IDMLENAVDSDAALIGKLM 82          

HSP 2 Score: 48.1358 bits (113), Expect = 4.566e-18
Identity = 22/42 (52.38%), Postives = 29/42 (69.05%), Query Frame = 3
Query:  444 GPSSVCVKIVAEKEGILDGFRVVINNGPGACQSVYHLHLHVL 569
            G   V    VA++ G+ +G+RVV+NNG    QSV+HLHLHVL
Sbjct:   79 GKLMVTASKVAKQLGMANGYRVVVNNGKDGAQSVFHLHLHVL 120          
BLAST of GO241472 vs. ExPASy Swiss-Prot
Match: HINT1_BOVIN (Histidine triad nucleotide-binding protein 1 OS=Bos taurus GN=HINT1 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.880e-17
Identity = 34/64 (53.12%), Postives = 46/64 (71.88%), Query Frame = 1
Query:  265 TIFDKIIAKEIPSSIVYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDILGHLL 456
            TIF KII KEIP+ I+YED++ LAF DI+PQAP H L+IPK    ++ ++ AE     +LGHL+
Sbjct:   17 TIFGKIIRKEIPAKIIYEDDQCLAFHDISPQAPTHFLVIPK--KYISQISAAEDDDESLLGHLM 78          

HSP 2 Score: 39.6614 bits (91), Expect = 2.880e-17
Identity = 16/28 (57.14%), Postives = 21/28 (75.00%), Query Frame = 3
Query:  486 GILDGFRVVINNGPGACQSVYHLHLHVL 569
            G+  G+R+V+N G    QSVYH+HLHVL
Sbjct:   89 GLKKGYRMVVNEGSDGGQSVYHVHLHVL 116          
BLAST of GO241472 vs. ExPASy Swiss-Prot
Match: HINT1_PONAB (Histidine triad nucleotide-binding protein 1 OS=Pongo abelii GN=HINT1 PE=2 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 4.869e-17
Identity = 33/64 (51.56%), Postives = 47/64 (73.44%), Query Frame = 1
Query:  265 TIFDKIIAKEIPSSIVYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDILGHLL 456
            TIF KII KEIP+ I++ED++ LAF DI+PQAP H L+IPK    ++ ++ AE  +  +LGHL+
Sbjct:   17 TIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPK--KHISQISVAEDDNESLLGHLM 78          

HSP 2 Score: 39.2762 bits (90), Expect = 4.869e-17
Identity = 16/28 (57.14%), Postives = 21/28 (75.00%), Query Frame = 3
Query:  486 GILDGFRVVINNGPGACQSVYHLHLHVL 569
            G+  G+R+V+N G    QSVYH+HLHVL
Sbjct:   89 GLNKGYRMVVNEGSDGGQSVYHVHLHVL 116          
BLAST of GO241472 vs. ExPASy Swiss-Prot
Match: HINT1_RABIT (Histidine triad nucleotide-binding protein 1 OS=Oryctolagus cuniculus GN=HINT1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.869e-17
Identity = 33/64 (51.56%), Postives = 46/64 (71.88%), Query Frame = 1
Query:  265 TIFDKIIAKEIPSSIVYEDEKVLAFRDINPQAPVHVLIIPKFRDGLTTLAKAEARHGDILGHLL 456
            TIF KII KEIP+ I++ED++ LAF DI+PQAP H L+IPK    ++ ++ AE     +LGHL+
Sbjct:   17 TIFGKIIRKEIPAKIIFEDDQCLAFHDISPQAPTHFLVIPK--KHISQISAAEDADESLLGHLM 78          

HSP 2 Score: 39.6614 bits (91), Expect = 4.869e-17
Identity = 16/28 (57.14%), Postives = 21/28 (75.00%), Query Frame = 3
Query:  486 GILDGFRVVINNGPGACQSVYHLHLHVL 569
            G+  G+R+V+N G    QSVYH+HLHVL
Sbjct:   89 GLKKGYRMVVNEGSDGGQSVYHVHLHVL 116          
The following BLAST results are available for this feature:
BLAST of GO241472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
ZB14_MAIZE3.948e-3581.5414 kDa zinc-binding protein OS=Zea mays GN=ZBP14 P... [more]
ZB14_BRAJU1.890e-3176.5614 kDa zinc-binding protein (Fragment) OS=Brassica... [more]
HINT2_BOVIN1.474e-1949.23Histidine triad nucleotide-binding protein 2, mito... [more]
HINT2_HUMAN1.918e-1949.23Histidine triad nucleotide-binding protein 2, mito... [more]
YHIT_SYNY32.002e-1959.38Uncharacterized HIT-like protein slr1234 OS=Synech... [more]
HINT2_MOUSE3.244e-1947.69Histidine triad nucleotide-binding protein 2, mito... [more]
HINT_CAEEL4.566e-1846.88Histidine triad nucleotide-binding protein 1 OS=Ca... [more]
HINT1_BOVIN2.880e-1753.13Histidine triad nucleotide-binding protein 1 OS=Bo... [more]
HINT1_PONAB4.869e-1751.56Histidine triad nucleotide-binding protein 1 OS=Po... [more]
HINT1_RABIT4.869e-1751.56Histidine triad nucleotide-binding protein 1 OS=Or... [more]

Pages

back to top
Properties
Property NameValue
Genbank description120 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 210 5, mRNA sequence.