GO241468

Overview
NameGO241468
Unique NameGO241468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
GO241468_ssr10 microsatellite GO241468_ssr10:10..24. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2614 contig Csv1_Contig2614:120..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241468 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.004e-20
Identity = 42/66 (63.64%), Postives = 49/66 (74.24%), Query Frame = 1
Query:   88 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFXXXXXXXXXQAAEAEGNCKCGPTCACVNCTCG 285
            MSDTCGNCDCAD++QCVKKGSSY AD +ET+ S           AAE +G CKCGP+C+C NCTCG
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSI--MTVVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of GO241468 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.015e-16
Identity = 36/64 (56.25%), Postives = 44/64 (68.75%), Query Frame = 1
Query:   97 TCGNCDCADRSQCVKKGSSYAADFVETDLSFXXXXXXXXXQAAEAEGNCKCGPTCACVNCTCGS 288
            TCGNCDC D+SQCVKKG+SY  D VET+ S+         +AAE +G CKCG  CAC +C CG+
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSY-VDEVIVAAEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of GO241468 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.000e-15
Identity = 40/65 (61.54%), Postives = 44/65 (67.69%), Query Frame = 1
Query:   88 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFXXXXXXXXXQAAEAEGNCKCGPTCACVNCTC 282
            MSD CGNCDCAD SQCVKKG+S   D VETD S+          AAE+ G CKCG +C CVNCTC
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNS--IDIVETDKSY-IEDVVMGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of GO241468 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.106e-14
Identity = 35/66 (53.03%), Postives = 41/66 (62.12%), Query Frame = 1
Query:   88 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFXXXXXXXXXQAAEAEGNCKCGPTCACVNCTCG 285
            MSD CGNCDCAD+SQCVKKG+SY    VE + S           A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKS-----HFEEVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of GO241468 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.106e-14
Identity = 35/66 (53.03%), Postives = 41/66 (62.12%), Query Frame = 1
Query:   88 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFXXXXXXXXXQAAEAEGNCKCGPTCACVNCTCG 285
            MSD CGNCDCAD+SQCVKKG+SY    VE + S           A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKS-----HFEEVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of GO241468 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.596e-13
Identity = 35/66 (53.03%), Postives = 42/66 (63.64%), Query Frame = 1
Query:   88 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFXXXXXXXXXQAAEAEGNCKCGPTCACVNCTCG 285
            MS  C NCDCAD +QCVKKG+SY    VET+ +           AAE +G CKCG  C+CV+CTCG
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETE-NRSMDTVFVDAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of GO241468 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.067e-13
Identity = 34/65 (52.31%), Postives = 40/65 (61.54%), Query Frame = 1
Query:   88 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFXXXXXXXXXQAAEAEGNCKCGPTCACVNCTC 282
            MS  C NCDC+D SQC KKG S+    VET+ +           AAE  GNCKCGP+CACV+C C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETE-NRSMDTVIMDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of GO241468 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.923e-13
Identity = 32/66 (48.48%), Postives = 39/66 (59.09%), Query Frame = 1
Query:   88 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFXXXXXXXXXQAAEAEGNCKCGPTCACVNCTCG 285
            MSD CGNCDCAD+SQCVKKG+SY    V+ + S          +  E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFEMAEEVGYE--ENDGKCKCTTGCSCAGCNCG 64          
BLAST of GO241468 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12
Identity = 31/66 (46.97%), Postives = 39/66 (59.09%), Query Frame = 1
Query:   88 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFXXXXXXXXXQAAEAEGNCKCGPTCACVNCTCG 285
            MSD CG+CDCAD+SQCVKKG+SY    V+ + S          +  E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHFEMAEEVGYE--ENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of GO241468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MT3_CARPA3.004e-2063.64Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC2.015e-1656.25Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE1.000e-1561.54Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3A_ORYSJ1.106e-1453.03Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI1.106e-1453.03Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3_MALDO1.596e-1353.03Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3_PRUAV6.067e-1352.31Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3B_ORYSJ7.923e-1348.48Metallothionein-like protein 3B OS=Oryza sativa su... [more]
MT3B_ORYSI3.011e-1246.97Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank description116 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 201 5, mRNA sequence.