GO241467

Overview
NameGO241467
Unique NameGO241467
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GO241467 vs. ExPASy Swiss-Prot
Match: CRTSO_SOLLC (Carotenoid isomerase, chloroplastic OS=Solanum lycopersicum GN=CRTISO PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 1.039e-67
Identity = 94/115 (81.74%), Postives = 104/115 (90.43%), Query Frame = 2
Query:    2 FVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGQHILHIFTICSIEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQSIAFREI 346
            +VKAPSFLSIHMGVKA+VLPPDTDCHHFVLEDDW  LE+PYGSIFLSIPTVLDSSLAPEG HILHIFT  SIEDWEGL+ KDY+AKKE+VA+ II+RLE  LFPGLK SI F+E+
Sbjct:  405 YVKAPSFLSIHMGVKADVLPPDTDCHHFVLEDDWTNLEKPYGSIFLSIPTVLDSSLAPEGHHILHIFTTSSIEDWEGLSPKDYEAKKEVVAERIISRLEKTLFPGLKSSILFKEV 519          

HSP 2 Score: 77.0258 bits (188), Expect = 1.039e-67
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1
Query:  361 QIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPFN 468
            ++G+PKTHRRYLARD GTYGPMPRGTPKGLLGMPFN
Sbjct:  518 EVGTPKTHRRYLARDSGTYGPMPRGTPKGLLGMPFN 553          
BLAST of GO241467 vs. ExPASy Swiss-Prot
Match: CRTSO_DAUCA (Carotenoid isomerase, chloroplastic OS=Daucus carota GN=CRTISO PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 8.686e-67
Identity = 91/115 (79.13%), Postives = 105/115 (91.30%), Query Frame = 2
Query:    2 FVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGQHILHIFTICSIEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQSIAFREI 346
            ++KAPSFLSIH+GVK++VLPPDTDCHHFVLEDDW+ LE PYGSIFLSIPTVLDSSLAPEG HILHIFT  SIEDW+G++QKDY+ KKELVADEII+RLE KLFPGL+ SI  +E+
Sbjct:  405 YIKAPSFLSIHLGVKSDVLPPDTDCHHFVLEDDWSNLEVPYGSIFLSIPTVLDSSLAPEGNHILHIFTTSSIEDWQGMSQKDYEKKKELVADEIISRLEKKLFPGLQSSIVLKEV 519          

HSP 2 Score: 75.485 bits (184), Expect = 8.686e-67
Identity = 31/36 (86.11%), Postives = 35/36 (97.22%), Query Frame = 1
Query:  361 QIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPFN 468
            ++G+PKTHRRYLARD GTYGPMP+GTPKGLLGMPFN
Sbjct:  518 EVGTPKTHRRYLARDSGTYGPMPQGTPKGLLGMPFN 553          
BLAST of GO241467 vs. ExPASy Swiss-Prot
Match: CRTSO_ARATH (Carotenoid isomerase, chloroplastic OS=Arabidopsis thaliana GN=CRTISO PE=2 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 7.264e-66
Identity = 93/115 (80.87%), Postives = 101/115 (87.83%), Query Frame = 2
Query:    2 FVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGQHILHIFTICSIEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQSIAFREI 346
            +VKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDW  LEEPYGSIFLSIPT+LDSSLAP+G+HILHIFT  SIEDWEGL  K+Y+AKKE VA  II RLE KLFPGL  SI F+E+
Sbjct:  385 YVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWKNLEEPYGSIFLSIPTILDSSLAPDGRHILHIFTTSSIEDWEGLPPKEYEAKKEDVAARIIQRLEKKLFPGLSSSITFKEV 499          

HSP 2 Score: 74.7146 bits (182), Expect = 7.264e-66
Identity = 30/36 (83.33%), Postives = 36/36 (100.00%), Query Frame = 1
Query:  361 QIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPFN 468
            ++G+P+THRR+LARD+GTYGPMPRGTPKGLLGMPFN
Sbjct:  498 EVGTPRTHRRFLARDKGTYGPMPRGTPKGLLGMPFN 533          
BLAST of GO241467 vs. ExPASy Swiss-Prot
Match: CRTS2_ONCHC (Carotenoid isomerase 2, chloroplastic OS=Oncidium hybrid cultivar GN=CRTISO2 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 5.531e-63
Identity = 89/115 (77.39%), Postives = 100/115 (86.96%), Query Frame = 2
Query:    2 FVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGQHILHIFTICSIEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQSIAFREI 346
            ++KAPSFLSIHMGVKA VLPPDTDCHHF+LED+W RLE PYGSIFLSIPTVLD SLAPEG HI HIFT  SIE+WEGL+ K+Y+ KKELVADEII RLE KLFPGLK S+  +E+
Sbjct:  377 YLKAPSFLSIHMGVKAFVLPPDTDCHHFILEDNWGRLELPYGSIFLSIPTVLDPSLAPEGHHIFHIFTTSSIENWEGLSHKEYEEKKELVADEIITRLEKKLFPGLKDSVVLKEV 491          

HSP 2 Score: 70.4774 bits (171), Expect = 5.531e-63
Identity = 29/36 (80.56%), Postives = 33/36 (91.67%), Query Frame = 1
Query:  361 QIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPFN 468
            ++G+PKTHRR+LARD GTYGPMPR  PKGLLGMPFN
Sbjct:  490 EVGTPKTHRRFLARDSGTYGPMPRKVPKGLLGMPFN 525          
BLAST of GO241467 vs. ExPASy Swiss-Prot
Match: CRTS1_ONCHC (Carotenoid isomerase 1, chloroplastic OS=Oncidium hybrid cultivar GN=CRTISO1 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 5.531e-63
Identity = 89/115 (77.39%), Postives = 100/115 (86.96%), Query Frame = 2
Query:    2 FVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWNRLEEPYGSIFLSIPTVLDSSLAPEGQHILHIFTICSIEDWEGLAQKDYDAKKELVADEIINRLENKLFPGLKQSIAFREI 346
            ++KAPSFLSIHMGVKA VLPPDTDCHHF+LED+W RLE PYGSIFLSIPTVLD SLAPEG HI HIFT  SIE+WEGL+ K+Y+ KKELVADEII RLE KLFPGLK S+  +E+
Sbjct:  377 YLKAPSFLSIHMGVKAFVLPPDTDCHHFILEDNWGRLELPYGSIFLSIPTVLDPSLAPEGHHIFHIFTTSSIENWEGLSHKEYEEKKELVADEIITRLEKKLFPGLKDSVVLKEV 491          

HSP 2 Score: 70.4774 bits (171), Expect = 5.531e-63
Identity = 29/36 (80.56%), Postives = 33/36 (91.67%), Query Frame = 1
Query:  361 QIGSPKTHRRYLARDQGTYGPMPRGTPKGLLGMPFN 468
            ++G+PKTHRR+LARD GTYGPMPR  PKGLLGMPFN
Sbjct:  490 EVGTPKTHRRFLARDSGTYGPMPRKVPKGLLGMPFN 525          
The following BLAST results are available for this feature:
BLAST of GO241467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CRTSO_SOLLC1.039e-6781.74Carotenoid isomerase, chloroplastic OS=Solanum lyc... [more]
CRTSO_DAUCA8.686e-6779.13Carotenoid isomerase, chloroplastic OS=Daucus caro... [more]
CRTSO_ARATH7.264e-6680.87Carotenoid isomerase, chloroplastic OS=Arabidopsis... [more]
CRTS2_ONCHC5.531e-6377.39Carotenoid isomerase 2, chloroplastic OS=Oncidium ... [more]
CRTS1_ONCHC5.531e-6377.39Carotenoid isomerase 1, chloroplastic OS=Oncidium ... [more]
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Properties
Property NameValue
Genbank description115 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone ci1 5, mRNA sequence.