GE213494

Overview
NameGE213494
Unique NameGE213494
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9434 contig Csv1_Contig9434:351..782. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213494 vs. ExPASy Swiss-Prot
Match: CNRB_DICDI (CLPTM1-like membrane protein cnrB OS=Dictyostelium discoideum GN=cnrB PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 6.480e-40
Identity = 80/132 (60.61%), Postives = 102/132 (77.27%), Query Frame = 1
Query:   25 FLAFKNDIQFWNKNKSMEGLSAKSVVVNFICQLIVFLYLLDNDTSWMILASSGVGCCIEFWKIGKAMHIEIDRSGTIPM---LRFRDRESYAGNKTKEYDDIAMKYLSGVLFFLAICSSIYSLMYERHKSWY 411
            FLAFKNDIQFW  NKSMEGLS K++ +N +C  I+FLYLLDN+TS+MILASSG G  +EFWK+GKAM I+I    ++P+   + F +++ Y  +KTK+YDD+AMKYLS +LF L I +SIYSL Y  HKSWY
Sbjct:  341 FLAFKNDIQFWKNNKSMEGLSVKTITLNCVCMGIIFLYLLDNETSYMILASSGFGFLVEFWKLGKAMTIKITWMTSLPLPKRIEFINKDEYM-SKTKQYDDMAMKYLSWLLFPLVIGTSIYSLYYHEHKSWY 471          
BLAST of GE213494 vs. ExPASy Swiss-Prot
Match: CLPT1_DANRE (Cleft lip and palate transmembrane protein 1 homolog OS=Danio rerio GN=clptm1 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.637e-33
Identity = 64/133 (48.12%), Postives = 92/133 (69.17%), Query Frame = 1
Query:   25 FLAFKNDIQFWNKNKSMEGLSAKSVVVNFICQLIVFLYLLDNDTSWMILASSGVGCCIEFWKIGKAMHIEIDR----SGTIPMLRFRDRESYAGNKTKEYDDIAMKYLSGVLFFLAICSSIYSLMYERHKSWY 411
            FLAFKNDIQFWN  +S+EGLS +S++      L+V LY+LDN+T++++  S  +G  I+FWKI K M + +DR    +G +P L F+D+ +Y  + TK YDD+A KYLS +L+ L  C ++YSL+Y  HK WY
Sbjct:  370 FLAFKNDIQFWNSRQSLEGLSVRSIIFGVFQSLVVLLYILDNETNFVVQVSVFIGLLIDFWKITKVMDVRLDRENRIAGIVPRLVFKDKSTYVESSTKIYDDMAFKYLSWLLYPLFGCYAVYSLLYVEHKGWY 502          
BLAST of GE213494 vs. ExPASy Swiss-Prot
Match: CLPT1_HUMAN (Cleft lip and palate transmembrane protein 1 OS=Homo sapiens GN=CLPTM1 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 6.495e-32
Identity = 63/133 (47.37%), Postives = 88/133 (66.17%), Query Frame = 1
Query:   25 FLAFKNDIQFWNKNKSMEGLSAKSVVVNFICQLIVFLYLLDNDTSWMILASSGVGCCIEFWKIGKAMHIEIDR----SGTIPMLRFRDRESYAGNKTKEYDDIAMKYLSGVLFFLAICSSIYSLMYERHKSWY 411
            FLAFKNDIQFWN  +S+EGLS +SV        +V LY+LDN+T++++  S  +G  I+ WKI K M + +DR    +G  P L F+D+ +Y  + TK YDD+A +YLS +LF L  C ++YSL+Y  HK WY
Sbjct:  372 FLAFKNDIQFWNSRQSLEGLSVRSVFFGVFQSFVVLLYILDNETNFVVQVSVFIGVLIDLWKITKVMDVRLDREHRVAGIFPRLSFKDKSTYIESSTKVYDDMAFRYLSWILFPLLGCYAVYSLLYLEHKGWY 504          
BLAST of GE213494 vs. ExPASy Swiss-Prot
Match: CLPT1_BOVIN (Cleft lip and palate transmembrane protein 1 homolog OS=Bos taurus GN=CLPTM1 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.468e-31
Identity = 62/133 (46.62%), Postives = 88/133 (66.17%), Query Frame = 1
Query:   25 FLAFKNDIQFWNKNKSMEGLSAKSVVVNFICQLIVFLYLLDNDTSWMILASSGVGCCIEFWKIGKAMHIEIDR----SGTIPMLRFRDRESYAGNKTKEYDDIAMKYLSGVLFFLAICSSIYSLMYERHKSWY 411
            FLAFKNDIQFWN  +S+EGLS +SV        +V LY+LDN+T++++  S  +G  I+ WKI K M + +DR    +G +P   F+D+ +Y  + TK YDD+A +YLS +LF L  C ++YSL+Y  HK WY
Sbjct:  372 FLAFKNDIQFWNSRQSLEGLSVRSVFFGVFQSFVVLLYILDNETNFVVQVSVFIGVLIDLWKITKVMDVRLDREHKVAGLLPRPTFQDKSTYVESSTKVYDDMAFRYLSWILFPLLGCYAVYSLLYLEHKGWY 504          
BLAST of GE213494 vs. ExPASy Swiss-Prot
Match: CLPT1_MOUSE (Cleft lip and palate transmembrane protein 1 homolog OS=Mus musculus GN=Clptm1 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 4.210e-31
Identity = 62/133 (46.62%), Postives = 87/133 (65.41%), Query Frame = 1
Query:   25 FLAFKNDIQFWNKNKSMEGLSAKSVVVNFICQLIVFLYLLDNDTSWMILASSGVGCCIEFWKIGKAMHIEIDR----SGTIPMLRFRDRESYAGNKTKEYDDIAMKYLSGVLFFLAICSSIYSLMYERHKSWY 411
            FLAFKNDIQFWN  +S+EGLS +SV        +V LY+LDN+T++++  S  +G  I+ WKI K M + +DR    +G  P   F+D+ +Y  + TK YDD+A +YLS +LF L  C ++YSL+Y  HK WY
Sbjct:  372 FLAFKNDIQFWNSRQSLEGLSVRSVFFGVFQSFVVLLYILDNETNFVVQVSVFIGVLIDLWKITKVMDVRLDREHRVAGIFPCPTFKDKSTYIESSTKVYDDMAFRYLSWILFPLLGCYAVYSLLYLEHKGWY 504          
BLAST of GE213494 vs. ExPASy Swiss-Prot
Match: CLP1L_HUMAN (Cleft lip and palate transmembrane protein 1-like protein OS=Homo sapiens GN=CLPTM1L PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 6.291e-27
Identity = 60/129 (46.51%), Postives = 85/129 (65.89%), Query Frame = 1
Query:   25 FLAFKNDIQFWNKNKSMEGLSAKSVVVNFICQLIVFLYLLDNDTSWMILASSGVGCCIEFWKIGKAMHIEIDRSGTIPMLRFRDRESYAGNKTKEYDDIAMKYLSGVLFFLAICSSIYSLMYERHKSWY 411
            FLAFKNDI FW K KSM G+S K+V+      +++FL+LLD  TS ++L  +GVG  IE WK+ KA+ + I   G +P  +F    S +  KT+EYD  AMKYLS +L+ L +  ++YSL+  ++KSWY
Sbjct:  302 FLAFKNDISFWKKKKSMIGMSTKAVLWRCFSTVVIFLFLLDEQTSLLVLVPAGVGAAIELWKVKKALKMTIFWRGLMPEFQF-GTYSESERKTEEYDTQAMKYLSYLLYPLCVGGAVYSLLNIKYKSWY 429          
BLAST of GE213494 vs. ExPASy Swiss-Prot
Match: CLP1L_DANRE (Cleft lip and palate transmembrane protein 1-like protein OS=Danio rerio GN=clptm1l PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.401e-26
Identity = 56/129 (43.41%), Postives = 84/129 (65.12%), Query Frame = 1
Query:   25 FLAFKNDIQFWNKNKSMEGLSAKSVVVNFICQLIVFLYLLDNDTSWMILASSGVGCCIEFWKIGKAMHIEIDRSGTIPMLRFRDRESYAGNKTKEYDDIAMKYLSGVLFFLAICSSIYSLMYERHKSWY 411
            FLAFKNDI FW   KSM G+S+K+V+      +++FLYLLD  TS ++L  +G+G  IE WK+ KA  I +   G  P   F   +  +  +T+EYD +AMKYLS +L+ L +  ++Y+L++ ++KSWY
Sbjct:  302 FLAFKNDISFWKHKKSMVGMSSKAVLWRCFSTIVIFLYLLDEQTSLLVLVPAGIGSLIEVWKVKKAFKIHVIWRGLTPTFLFGKLDE-SEKRTEEYDTLAMKYLSYLLYPLCVGGAVYALVFVKYKSWY 429          
BLAST of GE213494 vs. ExPASy Swiss-Prot
Match: CLP1L_MOUSE (Cleft lip and palate transmembrane protein 1-like protein OS=Mus musculus GN=Clptm1l PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 4.078e-26
Identity = 58/129 (44.96%), Postives = 85/129 (65.89%), Query Frame = 1
Query:   25 FLAFKNDIQFWNKNKSMEGLSAKSVVVNFICQLIVFLYLLDNDTSWMILASSGVGCCIEFWKIGKAMHIEIDRSGTIPMLRFRDRESYAGNKTKEYDDIAMKYLSGVLFFLAICSSIYSLMYERHKSWY 411
            FLAFK+DI FW K KSM G+S K+V+      +++FL+LLD  TS ++L  +GVG  IE WK+ KA+ I +   G  P+ +F    S +  KT++YD  AMKYLS +L+ L +  ++YSL+  ++KSWY
Sbjct:  303 FLAFKSDISFWKKKKSMIGMSTKAVLWRCFSTVVIFLFLLDEQTSLLVLIPAGVGAAIELWKVKKALKITVAWRGLRPVFQF-GTHSESERKTEKYDAQAMKYLSYLLYPLCVGGAVYSLLNIKYKSWY 430          
BLAST of GE213494 vs. ExPASy Swiss-Prot
Match: CLP1L_PONAB (Cleft lip and palate transmembrane protein 1-like protein OS=Pongo abelii GN=CLPTM1L PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 5.326e-26
Identity = 59/129 (45.74%), Postives = 83/129 (64.34%), Query Frame = 1
Query:   25 FLAFKNDIQFWNKNKSMEGLSAKSVVVNFICQLIVFLYLLDNDTSWMILASSGVGCCIEFWKIGKAMHIEIDRSGTIPMLRFRDRESYAGNKTKEYDDIAMKYLSGVLFFLAICSSIYSLMYERHKSWY 411
            FLAFKNDI FW K KSM G+S K+V+      +++FL+LLD  TS ++L  +GVG  IE WK+ KA+ + I   G +P        S +  KT+EYD  AMKYLS +L+ L +  ++YSL+  ++KSWY
Sbjct:  302 FLAFKNDISFWKKKKSMIGMSTKAVLWRCFSTVVIFLFLLDEQTSLLVLVPAGVGAAIELWKVKKALKMTILWRGLMPEFEL-GTYSESERKTEEYDTQAMKYLSYLLYPLCVGGAVYSLLNIKYKSWY 429          
BLAST of GE213494 vs. ExPASy Swiss-Prot
Match: CLP1L_CHICK (Cleft lip and palate transmembrane protein 1-like protein OS=Gallus gallus GN=CLPTM1L PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 9.084e-26
Identity = 57/129 (44.19%), Postives = 84/129 (65.12%), Query Frame = 1
Query:   25 FLAFKNDIQFWNKNKSMEGLSAKSVVVNFICQLIVFLYLLDNDTSWMILASSGVGCCIEFWKIGKAMHIEIDRSGTIPMLRFRDRESYAGNKTKEYDDIAMKYLSGVLFFLAICSSIYSLMYERHKSWY 411
            FLAFKNDI FW K +SM G+S K+V+      +++FL+LLD  TS ++L  +G+G  IE WK+ KA+ + +   G  P ++F    + +  KT+EYD  AMKYLS +L+ L I  + YSL+  ++KSWY
Sbjct:  302 FLAFKNDISFWKKKRSMIGMSTKAVLWRCFSTVVIFLFLLDEQTSLLVLIPAGIGAVIELWKVKKALKMTVKWQGIRPKVQF-GASNDSEKKTEEYDTQAMKYLSYLLYPLCIGGAAYSLLNVKYKSWY 429          
The following BLAST results are available for this feature:
BLAST of GE213494 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
CNRB_DICDI6.480e-4060.61CLPTM1-like membrane protein cnrB OS=Dictyostelium... [more]
CLPT1_DANRE2.637e-3348.12Cleft lip and palate transmembrane protein 1 homol... [more]
CLPT1_HUMAN6.495e-3247.37Cleft lip and palate transmembrane protein 1 OS=Ho... [more]
CLPT1_BOVIN2.468e-3146.62Cleft lip and palate transmembrane protein 1 homol... [more]
CLPT1_MOUSE4.210e-3146.62Cleft lip and palate transmembrane protein 1 homol... [more]
CLP1L_HUMAN6.291e-2746.51Cleft lip and palate transmembrane protein 1-like ... [more]
CLP1L_DANRE1.401e-2643.41Cleft lip and palate transmembrane protein 1-like ... [more]
CLP1L_MOUSE4.078e-2644.96Cleft lip and palate transmembrane protein 1-like ... [more]
CLP1L_PONAB5.326e-2645.74Cleft lip and palate transmembrane protein 1-like ... [more]
CLP1L_CHICK9.084e-2644.19Cleft lip and palate transmembrane protein 1-like ... [more]

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Properties
Property NameValue
Genbank description378 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.