GE213492

Overview
NameGE213492
Unique NameGE213492
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13796 contig Csv1_Contig13796:354..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213492 vs. ExPASy Swiss-Prot
Match: PER42_ARATH (Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=1 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 2.230e-47
Identity = 88/107 (82.24%), Postives = 99/107 (92.52%), Query Frame = 2
Query:   20 RYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLY 340
            RYIE IKEA+ERECPGVVSC+DILVLS R+G+ A+GGPYIPLKTGRRDG KSR ++LE YLPDHN+S+SVVLE+F +IGID PGLVALLGSHSVGRTHCVKLVHRLY
Sbjct:  106 RYIEEIKEALERECPGVVSCSDILVLSAREGIEAVGGPYIPLKTGRRDGLKSRTDMLESYLPDHNESISVVLEKFKSIGIDTPGLVALLGSHSVGRTHCVKLVHRLY 212          
BLAST of GE213492 vs. ExPASy Swiss-Prot
Match: PER21_ARATH (Peroxidase 21 OS=Arabidopsis thaliana GN=PER21 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.477e-30
Identity = 64/108 (59.26%), Postives = 80/108 (74.07%), Query Frame = 2
Query:   20 RYIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPL-KTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLY 340
            +Y++ IK+A+E+ECP  VSCADI+ LS RDG+V L GP I + KTGRRD R S    +E  +P+HNDS+S V+  F +IGID    VALLG+HSVGR HCV LVHRLY
Sbjct:  105 KYVKIIKDALEKECPSTVSCADIVALSARDGIVMLKGPKIEMIKTGRRDSRGSYLGDVETLIPNHNDSLSSVISTFNSIGIDVEATVALLGAHSVGRVHCVNLVHRLY 212          
BLAST of GE213492 vs. ExPASy Swiss-Prot
Match: PER52_ARATH (Peroxidase 52 OS=Arabidopsis thaliana GN=PER52 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.532e-22
Identity = 48/105 (45.71%), Postives = 68/105 (64.76%), Query Frame = 2
Query:   26 IENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLY 340
            I+NIK AVE+ CPGVVSCADIL ++ RD VVALGGP   +K GRRD R +        +P    S+S ++  F+A+G+    +VAL G+H++G++ C     R+Y
Sbjct:  108 IDNIKSAVEKACPGVVSCADILAIAARDSVVALGGPNWNVKVGRRDARTASQAAANSNIPAPTSSLSQLISSFSAVGLSTRDMVALSGAHTIGQSRCTNFRARIY 212          
BLAST of GE213492 vs. ExPASy Swiss-Prot
Match: PER48_ARATH (Putative Peroxidase 48 OS=Arabidopsis thaliana GN=PER48 PE=2 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 9.436e-22
Identity = 47/105 (44.76%), Postives = 70/105 (66.67%), Query Frame = 2
Query:   26 IENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLY 340
            I+ +K  +E  CPGVVSCAD+LVL+ R+ V+  GGP+ PL+TGR+D   +  +  E  LP  + ++SV+L+RF+  G +    V+L G+HS+G THC    +RLY
Sbjct:  145 IDAVKSELENVCPGVVSCADLLVLAAREAVLVAGGPFYPLETGRKDSAAAYRDFAEHELPAPDATLSVILQRFSFRGFNERETVSLFGAHSIGITHCTFFKNRLY 249          
BLAST of GE213492 vs. ExPASy Swiss-Prot
Match: PERP7_BRARA (Peroxidase P7 OS=Brassica rapa PE=1 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 2.324e-20
Identity = 46/105 (43.81%), Postives = 68/105 (64.76%), Query Frame = 2
Query:   26 IENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLY 340
            I +IK AVE+ CPGVVSCADIL ++ RD VV LGGP   +K GRRD + +        +P  + S+S ++  F+A+G+    +VAL G+H++G++ CV    R+Y
Sbjct:   80 INDIKSAVEKACPGVVSCADILAIAARDSVVQLGGPNWNVKVGRRDAKTASQAAANSNIPAPSMSLSQLISSFSAVGLSTRDMVALSGAHTIGQSRCVNFRARVY 184          
BLAST of GE213492 vs. ExPASy Swiss-Prot
Match: PER56_ARATH (Peroxidase 56 OS=Arabidopsis thaliana GN=PER56 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.964e-20
Identity = 45/105 (42.86%), Postives = 69/105 (65.71%), Query Frame = 2
Query:   26 IENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLY 340
            I+N+K A+E+ECPG+VSC+D+L L  RD +VAL GP   ++TGRRDG  +        LP   +++S ++ +F + G+D   LV L G H++G  HC ++ +RLY
Sbjct:  108 IDNVKAALEKECPGIVSCSDVLALVARDAMVALNGPSWEVETGRRDGLVTNITEALLNLPSPFNNISSLITQFQSKGLDKKDLVVLSGGHTIGNGHCPQITNRLY 212          
BLAST of GE213492 vs. ExPASy Swiss-Prot
Match: PER18_ARATH (Peroxidase 18 OS=Arabidopsis thaliana GN=PER18 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.570e-19
Identity = 45/97 (46.39%), Postives = 64/97 (65.98%), Query Frame = 2
Query:   26 IENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHC 316
            IE++K  +E  CPG VSCADILVL+ RD V ALGGP +P+ TGRRDGR S A  +   + D + ++  ++  F++ G+    LV L G+H++G  HC
Sbjct:  105 IESVKNILEIFCPGTVSCADILVLAARDAVEALGGPVVPIPTGRRDGRVSMAANVRPNIIDTDFTVDKMINIFSSKGLSVHDLVVLSGAHTIGAAHC 201          
BLAST of GE213492 vs. ExPASy Swiss-Prot
Match: PER61_ARATH (Probable peroxidase 61 OS=Arabidopsis thaliana GN=PER61 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.724e-19
Identity = 49/105 (46.67%), Postives = 66/105 (62.86%), Query Frame = 2
Query:   26 IENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLY 340
            I+ IK+ +E  CPGVVSCADIL L+ RD V   G P  P+ TGRRDG    A+ ++  LP  + S+   L  F + G+D   +  LLG+HS+G+THC  +V RLY
Sbjct:  111 IDKIKQVLESRCPGVVSCADILNLATRDAVHMAGAPSYPVFTGRRDGGTLNADAVD--LPSPSISVDESLAYFKSKGLDVLDMTTLLGAHSMGKTHCSYVVDRLY 213          
BLAST of GE213492 vs. ExPASy Swiss-Prot
Match: PER3_ARATH (Peroxidase 3 OS=Arabidopsis thaliana GN=PER3 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.724e-19
Identity = 46/106 (43.40%), Postives = 65/106 (61.32%), Query Frame = 2
Query:   23 YIENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLY 340
            +I+ IK  +E +CPG+VSCADI+ L+ RD VV  GGP   + TGRRDGR S A      +P    +++ +   FA  G+D   LV L G+H++G +HC    +RLY
Sbjct:  101 FIDAIKSVLEAQCPGIVSCADIIALASRDAVVFTGGPNWSVPTGRRDGRISNAAEALANIPPPTSNITNLQTLFANQGLDLKDLVLLSGAHTIGVSHCSSFTNRLY 206          
BLAST of GE213492 vs. ExPASy Swiss-Prot
Match: PER4_VITVI (Peroxidase 4 OS=Vitis vinifera GN=GSVIVT00023967001 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.764e-19
Identity = 44/105 (41.90%), Postives = 63/105 (60.00%), Query Frame = 2
Query:   26 IENIKEAVERECPGVVSCADILVLSGRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLY 340
            I+NIK  VE  CPGVVSCADI+ ++ RD VV LGGP   +K GRRD + +        +P    S+S ++ +F A G+    +VAL G+H++G+  C     R+Y
Sbjct:  105 IDNIKSQVESVCPGVVSCADIIAIAARDSVVILGGPDWDVKLGRRDSKTASLSGANNNIPPPTSSLSNLISKFQAQGLSTRDMVALSGAHTIGQARCTSFRARIY 209          
The following BLAST results are available for this feature:
BLAST of GE213492 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
PER42_ARATH2.230e-4782.24Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=... [more]
PER21_ARATH2.477e-3059.26Peroxidase 21 OS=Arabidopsis thaliana GN=PER21 PE=... [more]
PER52_ARATH5.532e-2245.71Peroxidase 52 OS=Arabidopsis thaliana GN=PER52 PE=... [more]
PER48_ARATH9.436e-2244.76Putative Peroxidase 48 OS=Arabidopsis thaliana GN=... [more]
PERP7_BRARA2.324e-2043.81Peroxidase P7 OS=Brassica rapa PE=1 SV=3[more]
PER56_ARATH3.964e-2042.86Peroxidase 56 OS=Arabidopsis thaliana GN=PER56 PE=... [more]
PER18_ARATH2.570e-1946.39Peroxidase 18 OS=Arabidopsis thaliana GN=PER18 PE=... [more]
PER61_ARATH5.724e-1946.67Probable peroxidase 61 OS=Arabidopsis thaliana GN=... [more]
PER3_ARATH5.724e-1943.40Peroxidase 3 OS=Arabidopsis thaliana GN=PER3 PE=1 ... [more]
PER4_VITVI9.764e-1941.90Peroxidase 4 OS=Vitis vinifera GN=GSVIVT0002396700... [more]

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Properties
Property NameValue
Genbank description376 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.