GE213488

Overview
NameGE213488
Unique NameGE213488
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13722 contig Csv1_Contig13722:1..504. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213488 vs. ExPASy Swiss-Prot
Match: HS101_ORYSJ (Heat shock protein 101 OS=Oryza sativa subsp. japonica GN=HSP101 PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 8.405e-68
Identity = 125/153 (81.70%), Postives = 144/153 (94.12%), Query Frame = 2
Query:   26 TVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLVREEIDENSTVNIDASPKGDNLVY 484
            TVDFRNTVIIMTSNLGAEHLL+GM+GK +M+VARD V+QEVR+HFRPELLNRLDEIV+FDPLSHEQLRKVARLQMKDVA+RLAERGVALAVTDAALD++L+ SYDP+YGARPIRRW+EK+VVT+LS+ML++EEIDEN TV IDA+P  D L Y
Sbjct:  708 TVDFRNTVIIMTSNLGAEHLLAGMVGKNSMKVARDLVMQEVRRHFRPELLNRLDEIVIFDPLSHEQLRKVARLQMKDVAVRLAERGVALAVTDAALDVILSLSYDPVYGARPIRRWIEKRVVTQLSKMLIQEEIDENCTVYIDAAPHKDELAY 860          
BLAST of GE213488 vs. ExPASy Swiss-Prot
Match: HS101_ARATH (Heat shock protein 101 OS=Arabidopsis thaliana GN=HSP101 PE=2 SV=2)

HSP 1 Score: 255.373 bits (651), Expect = 1.098e-67
Identity = 130/153 (84.97%), Postives = 144/153 (94.12%), Query Frame = 2
Query:   26 TVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLVREEIDENSTVNIDASPKGDNLVY 484
            TVDFRN+VIIMTSNLGAEHLL+G+ GKVTM+VARD V++EVRKHFRPELLNRLDEIVVFDPLSH+QLRKVARLQMKDVA+RLAERGVALAVTDAALD +LAESYDP+YGARPIRRW+EKKVVTELS+M+VREEIDENSTV IDA     +LVY
Sbjct:  707 TVDFRNSVIIMTSNLGAEHLLAGLTGKVTMEVARDCVMREVRKHFRPELLNRLDEIVVFDPLSHDQLRKVARLQMKDVAVRLAERGVALAVTDAALDYILAESYDPVYGARPIRRWMEKKVVTELSKMVVREEIDENSTVYIDAG--AGDLVY 857          
BLAST of GE213488 vs. ExPASy Swiss-Prot
Match: CLPB2_STRAW (Chaperone protein clpB 2 OS=Streptomyces avermitilis GN=clpB2 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 7.182e-35
Identity = 70/149 (46.98%), Postives = 105/149 (70.47%), Query Frame = 2
Query:   14 ARAGTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQV-ARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLVREEIDENSTVNIDA 457
            A+  TVDFRNTVIIMTSN+G+EHLL G   +  ++  AR  V+ E+R HFRPE LNR+D+IV+F PL   Q+ ++  LQ  ++  RLAER + + +TDA  +++  + YDP+YGARP+RR++  +V T + R L+R ++ + +TV +DA
Sbjct:  710 AQGRTVDFRNTVIIMTSNIGSEHLLDGATAEGEIKPDARALVMGELRGHFRPEFLNRVDDIVLFKPLGERQIERIVELQFDELRQRLAERRITVELTDAGREVIAHQGYDPVYGARPLRRYISHEVETLVGRALLRGDVQDGATVRVDA 858          
BLAST of GE213488 vs. ExPASy Swiss-Prot
Match: CLPB_THET8 (Chaperone protein clpB OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=clpB PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 4.655e-34
Identity = 67/148 (45.27%), Postives = 104/148 (70.27%), Query Frame = 2
Query:   26 TVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLVREEIDENSTVNIDASPKG 469
            TVDFRNTVII+TSNLG+  +L G+      +  RD+V + +++HFRPE LNRLDEIVVF PL+ EQ+R++  +Q+  +  RLAE+ ++L +T+AA D +    YDP++GARP+RR +++++ T L++ ++  E+ E   V +D  P G
Sbjct:  696 TVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKEGDRVQVDVGPAG 843          
BLAST of GE213488 vs. ExPASy Swiss-Prot
Match: CLPB_THET2 (Chaperone protein clpB OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=clpB PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 4.655e-34
Identity = 67/148 (45.27%), Postives = 104/148 (70.27%), Query Frame = 2
Query:   26 TVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLVREEIDENSTVNIDASPKG 469
            TVDFRNTVII+TSNLG+  +L G+      +  RD+V + +++HFRPE LNRLDEIVVF PL+ EQ+R++  +Q+  +  RLAE+ ++L +T+AA D +    YDP++GARP+RR +++++ T L++ ++  E+ E   V +D  P G
Sbjct:  696 TVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKEGDRVQVDVGPAG 843          
BLAST of GE213488 vs. ExPASy Swiss-Prot
Match: CLP_TRYBB (Heat shock protein 100 OS=Trypanosoma brucei brucei GN=HSP100 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.147e-32
Identity = 71/157 (45.22%), Postives = 99/157 (63.06%), Query Frame = 2
Query:   14 ARAGTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLVREEIDENSTVNIDASPKGDNLVY 484
            +R  TVDF NT+I+MTSNLG+EHLL+      + +V R+ VL  VR +FRPEL+NRLD+IVVF  L  E LR V    +  V  RL   G ++ + D   D +L   +D   GARP+RRW+EK +VTE+ RML+ +E+  NST+ +     G+ L +
Sbjct:  700 SRGRTVDFSNTIIVMTSNLGSEHLLNPEETNESYEVLRENVLAAVRSYFRPELINRLDDIVVFRRLRTEDLRGVVDNLIAGVNERLKSSGFSVLLDDGVKDFILEHGHDANMGARPLRRWIEKNIVTEIGRMLIAKELPPNSTLRVSLPEGGNKLTF 856          
BLAST of GE213488 vs. ExPASy Swiss-Prot
Match: CLPB_DESVH (Chaperone protein clpB OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=clpB PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.162e-31
Identity = 64/144 (44.44%), Postives = 100/144 (69.44%), Query Frame = 2
Query:   26 TVDFRNTVIIMTSNLGAEHLLSGMM-GKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLVREEIDENSTVNID 454
            TVDFRNT+IIMTSN+G+ ++L G+  G   +   R++V++E+R+HFRPE LNR+DE V+F PL   Q+ ++  L +  +  RLAER + + + D A D +   +YDP+YGARP+RR+L+  + T L+R L+  E+ + +TV +D
Sbjct:  711 TVDFRNTIIIMTSNIGSPYMLDGISEGGEFLSGVREKVMEELRRHFRPEFLNRVDETVLFKPLLPAQIARIVELLLGRLRGRLAERKIDIRLGDVARDFIAKAAYDPVYGARPLRRYLQHNIETPLARKLIAGELRDGTTVEVD 854          
BLAST of GE213488 vs. ExPASy Swiss-Prot
Match: CLPB_MEIRU (Chaperone protein clpB OS=Meiothermus ruber GN=clpB PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 3.688e-31
Identity = 62/148 (41.89%), Postives = 102/148 (68.92%), Query Frame = 2
Query:   26 TVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLVREEIDENSTVNIDASPKG 469
            TVDFRNTVII+TSN+G+  +  G+    + +  R++V   +++HFRPE LNRLDEIVVF PL+ EQ+  + ++Q++ V  RLAER + L ++  ALD +    YDP++GARP++R +++++ T LSR ++  E+ + + + + + P G
Sbjct:  696 TVDFRNTVIILTSNIGSPLIFEGIQSGQSYETIRERVFGVLQQHFRPEFLNRLDEIVVFRPLAREQIAAIVQIQLEAVRKRLAERRITLELSQEALDFLAQRGYDPVFGARPLKRVIQRELETPLSRKILAGEVADGAHLYVGSGPLG 843          
BLAST of GE213488 vs. ExPASy Swiss-Prot
Match: CLPB_NEIMB (Chaperone protein clpB OS=Neisseria meningitidis serogroup B GN=clpB PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 4.817e-31
Identity = 62/153 (40.52%), Postives = 106/153 (69.28%), Query Frame = 2
Query:   26 TVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLVREEIDENSTVNIDASPKGDNLVY 484
            TVDF+NTVI+MTSN+G++H+    MG    +  ++ V+++V++HFRPE++NR+DE+VVF  L  + +R +A++Q+K +  RL ++ + LAV+DAALDI+    +DPIYGARP++R ++ ++   L++ L+       S + ++A   GD L +
Sbjct:  710 TVDFKNTVIVMTSNIGSQHIQQ--MGIQDYEAVKEVVMEDVKEHFRPEMINRIDEVVVFHGLDQDNIRNIAKIQLKGLEKRLEKQNLRLAVSDAALDIIAKAGFDPIYGARPLKRAIQSEIENPLAKALLAGNYAPESEIRVEAD--GDRLKF 858          
BLAST of GE213488 vs. ExPASy Swiss-Prot
Match: CLPB_CLOPE (Chaperone protein clpB OS=Clostridium perfringens GN=clpB PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 6.291e-31
Identity = 62/143 (43.36%), Postives = 98/143 (68.53%), Query Frame = 2
Query:   26 TVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVAIRLAERGVALAVTDAALDIVLAESYDPIYGARPIRRWLEKKVVTELSRMLVREEIDENSTVNID 454
            TVDF+NT+IIMTSN+G+ +LL    G+      R+ V+ E++  F+PE LNR+D+I++F PLS E ++K+  + ++DV  RL ER + L VTD A +I+  E YDP+YGARP++R++   + TE+++ ++  EI + S   ID
Sbjct:  713 TVDFKNTIIIMTSNIGSGYLLENKSGEGIEDDIRENVMNEMKLRFKPEFLNRVDDIIMFRPLSSEGIKKIIDIFLRDVENRLRERNITLEVTDRAKEILAEEGYDPVYGARPLKRYISNVLETEIAKKIIAGEIYDGSVALID 855          
The following BLAST results are available for this feature:
BLAST of GE213488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 193
Match NameE-valueIdentityDescription
HS101_ORYSJ8.405e-6881.70Heat shock protein 101 OS=Oryza sativa subsp. japo... [more]
HS101_ARATH1.098e-6784.97Heat shock protein 101 OS=Arabidopsis thaliana GN=... [more]
CLPB2_STRAW7.182e-3546.98Chaperone protein clpB 2 OS=Streptomyces avermitil... [more]
CLPB_THET84.655e-3445.27Chaperone protein clpB OS=Thermus thermophilus (st... [more]
CLPB_THET24.655e-3445.27Chaperone protein clpB OS=Thermus thermophilus (st... [more]
CLP_TRYBB1.147e-3245.22Heat shock protein 100 OS=Trypanosoma brucei bruce... [more]
CLPB_DESVH2.162e-3144.44Chaperone protein clpB OS=Desulfovibrio vulgaris (... [more]
CLPB_MEIRU3.688e-3141.89Chaperone protein clpB OS=Meiothermus ruber GN=clp... [more]
CLPB_NEIMB4.817e-3140.52Chaperone protein clpB OS=Neisseria meningitidis s... [more]
CLPB_CLOPE6.291e-3143.36Chaperone protein clpB OS=Clostridium perfringens ... [more]

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Properties
Property NameValue
Genbank description372 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.