GE213483

Overview
NameGE213483
Unique NameGE213483
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig621 contig Csv1_Contig621:372..674. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213483 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.223e-45
Identity = 85/87 (97.70%), Postives = 87/87 (100.00%), Query Frame = -1
Query:   22 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREY 282
            GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR++SENKREY
Sbjct:   51 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSENKREY 137          
BLAST of GE213483 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 4.649e-45
Identity = 84/87 (96.55%), Postives = 87/87 (100.00%), Query Frame = -1
Query:   22 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREY 282
            GTFKL+LQF+EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR+FSENKREY
Sbjct:   51 GTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREY 137          
BLAST of GE213483 vs. ExPASy Swiss-Prot
Match: UBC2_ARATH (Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.767e-44
Identity = 83/87 (95.40%), Postives = 87/87 (100.00%), Query Frame = -1
Query:   22 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREY 282
            GTFKL+LQF+EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR+FSE+KREY
Sbjct:   51 GTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSESKREY 137          
BLAST of GE213483 vs. ExPASy Swiss-Prot
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 3.935e-44
Identity = 82/87 (94.25%), Postives = 87/87 (100.00%), Query Frame = -1
Query:   22 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREY 282
            GTFKL+LQF+EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR++SE+KREY
Sbjct:   51 GTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREY 137          
BLAST of GE213483 vs. ExPASy Swiss-Prot
Match: UBC3_ARATH (Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana GN=UBC3 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 6.713e-44
Identity = 82/87 (94.25%), Postives = 85/87 (97.70%), Query Frame = -1
Query:   22 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREY 282
            GTFKLTL FTEDYPNKPP VRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAA+LTSIQSLLCDPNP+SPAN+EAARLFSENKREY
Sbjct:   51 GTFKLTLHFTEDYPNKPPIVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAVLTSIQSLLCDPNPDSPANAEAARLFSENKREY 137          
BLAST of GE213483 vs. ExPASy Swiss-Prot
Match: UBC2_DICDI (Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium discoideum GN=ubc2 PE=3 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 2.640e-40
Identity = 74/86 (86.05%), Postives = 83/86 (96.51%), Query Frame = -1
Query:   22 TFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREY 279
            TFKL+LQF+E+YPN  PTV+F+S+MFHPN+YADGSICLDILQNQWSPIYD+AAILTSIQSLLCDPNPNSPANSE+ARLF ENKREY
Sbjct:   52 TFKLSLQFSEEYPNDAPTVKFLSKMFHPNVYADGSICLDILQNQWSPIYDIAAILTSIQSLLCDPNPNSPANSESARLFRENKREY 137          
BLAST of GE213483 vs. ExPASy Swiss-Prot
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.711e-39
Identity = 72/87 (82.76%), Postives = 84/87 (96.55%), Query Frame = -1
Query:   22 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREY 282
            GTFKLT++FTE+YPNKPPTVRFVS+MFHPN+YADGSICLDILQN+WSP YDV++ILTSIQSLL +PNPNSPANS+AA+L+ ENKREY
Sbjct:   51 GTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREY 137          
BLAST of GE213483 vs. ExPASy Swiss-Prot
Match: UBE2A_HUMAN (Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens GN=UBE2A PE=2 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 1.711e-39
Identity = 72/87 (82.76%), Postives = 84/87 (96.55%), Query Frame = -1
Query:   22 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREY 282
            GTFKLT++FTE+YPNKPPTVRFVS+MFHPN+YADGSICLDILQN+WSP YDV++ILTSIQSLL +PNPNSPANS+AA+L+ ENKREY
Sbjct:   51 GTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREY 137          
BLAST of GE213483 vs. ExPASy Swiss-Prot
Match: UBCD6_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=UbcD6 PE=2 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 6.502e-39
Identity = 71/87 (81.61%), Postives = 82/87 (94.25%), Query Frame = -1
Query:   22 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREY 282
            GTFKLT++FTE+YPNKPPTVRFVS++FHPN+YADG ICLDILQN+WSP YDV+AILTSIQSLL DPNPNSPANS AA+L+ EN+REY
Sbjct:   51 GTFKLTIEFTEEYPNKPPTVRFVSKVFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANSTAAQLYKENRREY 137          
BLAST of GE213483 vs. ExPASy Swiss-Prot
Match: UBC1_CAEEL (Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans GN=ubc-1 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.448e-38
Identity = 71/87 (81.61%), Postives = 83/87 (95.40%), Query Frame = -1
Query:   22 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREY 282
            GTFKL+L+FTE+YPNKPPTV+F+S+MFHPN+YADGSICLDILQN+WSP YDVAAILTSIQSLL +PNPNSPANS AA+L+ EN+REY
Sbjct:   51 GTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREY 137          
The following BLAST results are available for this feature:
BLAST of GE213483 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 220
Match NameE-valueIdentityDescription
UBC2_WHEAT1.223e-4597.70Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest... [more]
UBC2_MEDSA4.649e-4596.55Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]
UBC2_ARATH1.767e-4495.40Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis t... [more]
UBC1_ARATH3.935e-4494.25Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis t... [more]
UBC3_ARATH6.713e-4494.25Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis t... [more]
UBC2_DICDI2.640e-4086.05Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium... [more]
UBE2A_MOUSE1.711e-3982.76Ubiquitin-conjugating enzyme E2 A OS=Mus musculus ... [more]
UBE2A_HUMAN1.711e-3982.76Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens ... [more]
UBCD6_DROME6.502e-3981.61Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC1_CAEEL1.448e-3881.61Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditi... [more]

Pages

back to top
Properties
Property NameValue
Genbank description365 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.