GE213474

Overview
NameGE213474
Unique NameGE213474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3716 contig Csv1_Contig3716:972..1343. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213474 vs. ExPASy Swiss-Prot
Match: UGPA2_ARATH (Probable UTP--glucose-1-phosphate uridylyltransferase 2 OS=Arabidopsis thaliana GN=At3g03250 PE=1 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 2.862e-55
Identity = 106/117 (90.60%), Postives = 112/117 (95.73%), Query Frame = -1
Query:   22 LAWSRPRYCMEVTPKTLADVKGGTLISYEGKVKLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVP 372
            L  ++  YCMEVTPKTLADVKGGTLISYEGKV+LLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIK+LVEADALKMEIIPNPKEVDG+KVLQLETAAGAAIRFFD+AIG NVP
Sbjct:  236 LIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKKLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDNAIGVNVP 352          
BLAST of GE213474 vs. ExPASy Swiss-Prot
Match: UGPA1_ARATH (UTP--glucose-1-phosphate uridylyltransferase 1 OS=Arabidopsis thaliana GN=At5g17310 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 2.862e-55
Identity = 106/117 (90.60%), Postives = 112/117 (95.73%), Query Frame = -1
Query:   22 LAWSRPRYCMEVTPKTLADVKGGTLISYEGKVKLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVP 372
            L  ++  YCMEVTPKTLADVKGGTLISYEGKV+LLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIK+LVEADALKMEIIPNPKEVDG+KVLQLETAAGAAIRFFD+AIG NVP
Sbjct:  237 LIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKKLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDNAIGVNVP 353          
BLAST of GE213474 vs. ExPASy Swiss-Prot
Match: UGPA_MUSAC (UTP--glucose-1-phosphate uridylyltransferase OS=Musa acuminata GN=UGPA PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 3.738e-55
Identity = 105/110 (95.45%), Postives = 108/110 (98.18%), Query Frame = -1
Query:   22 YCMEVTPKTLADVKGGTLISYEGKVKLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVP 351
            YCMEVTPKTLADVKGGTLISYEG+V+LLEIAQVPD HVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVDG+KVLQLETAAGAAIRFFDHAIG NVP
Sbjct:  241 YCMEVTPKTLADVKGGTLISYEGRVQLLEIAQVPDAHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDHAIGINVP 350          
BLAST of GE213474 vs. ExPASy Swiss-Prot
Match: UGPA_SOLTU (UTP--glucose-1-phosphate uridylyltransferase OS=Solanum tuberosum PE=1 SV=3)

HSP 1 Score: 211.46 bits (537), Expect = 1.088e-54
Identity = 105/117 (89.74%), Postives = 110/117 (94.02%), Query Frame = -1
Query:   22 LAWSRPRYCMEVTPKTLADVKGGTLISYEGKVKLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVP 372
            L  ++  YCMEVTPKTLADVKGGTLISYEGKV+LLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNL AIKRLVEADALKMEIIPNPKEVDG+KVLQLETAAGAAI+FFD AIG NVP
Sbjct:  243 LILNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLSAIKRLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIKFFDRAIGANVP 359          
BLAST of GE213474 vs. ExPASy Swiss-Prot
Match: UGPA_PYRPY (UTP--glucose-1-phosphate uridylyltransferase OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 1.855e-54
Identity = 104/117 (88.89%), Postives = 110/117 (94.02%), Query Frame = -1
Query:   22 LAWSRPRYCMEVTPKTLADVKGGTLISYEGKVKLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVP 372
            L   +  YCMEVTPKTLADVKGGTLISYEG+V+LLEIAQVPD+HVNEFKSIEKFKIFNTNNLWVNL AIKRLVEADALKMEIIPNPKEVDG+KVLQLETAAGAAIRFF+HAIG NVP
Sbjct:  238 LIQKKNEYCMEVTPKTLADVKGGTLISYEGRVQLLEIAQVPDQHVNEFKSIEKFKIFNTNNLWVNLNAIKRLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFNHAIGINVP 354          
BLAST of GE213474 vs. ExPASy Swiss-Prot
Match: UGPA_ASTPN (UTP--glucose-1-phosphate uridylyltransferase OS=Astragalus penduliflorus GN=UGP PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 4.133e-54
Identity = 104/110 (94.55%), Postives = 107/110 (97.27%), Query Frame = -1
Query:   22 YCMEVTPKTLADVKGGTLISYEGKVKLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVP 351
            YCMEVTPKTLADVKGGTLISYEG+V+LLEIAQVPDEHV EFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVDG+KVLQLETAAGAAIRFFD AIG NVP
Sbjct:  245 YCMEVTPKTLADVKGGTLISYEGRVQLLEIAQVPDEHVGEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDKAIGINVP 354          
BLAST of GE213474 vs. ExPASy Swiss-Prot
Match: UGPA_HORVU (UTP--glucose-1-phosphate uridylyltransferase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 4.570e-53
Identity = 102/117 (87.18%), Postives = 111/117 (94.87%), Query Frame = -1
Query:   22 LAWSRPRYCMEVTPKTLADVKGGTLISYEGKVKLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVDGIKVLQLETAAGAAIRFFDHAIGCNVP 372
            L  ++  YCMEVTPKTLADVKGGTLISYEG+V+LLEIAQVPDEHV+EFKSIEKFKIFNTNNLWVNLKAIKRLV+A+ALKMEIIPNPKEVDG+KVLQLETAAGAAIRFF+ AIG NVP
Sbjct:  240 LIHNQNEYCMEVTPKTLADVKGGTLISYEGRVQLLEIAQVPDEHVDEFKSIEKFKIFNTNNLWVNLKAIKRLVDAEALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFEKAIGINVP 356          
BLAST of GE213474 vs. ExPASy Swiss-Prot
Match: UGPA_CRIGR (UTP--glucose-1-phosphate uridylyltransferase OS=Cricetulus griseus GN=UGP2 PE=2 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 2.278e-36
Identity = 74/114 (64.91%), Postives = 93/114 (81.58%), Query Frame = -1
Query:   22 RPRYCMEVTPKTLADVKGGTLISYEGKVKLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVD-GIKVLQLETAAGAAIRFFDHAIGCNVP 360
            R  + MEVT KT ADVKGGTL  YEGK++L+EIAQVP  HV+EFKS+ KFKIFNTNNLW++L A+KRL E +A+ MEII NPK +D G+ V+QLETA GAAI+ F++++G NVP
Sbjct:  275 RCEFVMEVTNKTRADVKGGTLTQYEGKLRLVEIAQVPKAHVDEFKSVSKFKIFNTNNLWISLAAVKRLQEQNAIDMEIIVNPKTLDGGLNVIQLETAVGAAIKSFENSLGINVP 388          
BLAST of GE213474 vs. ExPASy Swiss-Prot
Match: UGPA_MOUSE (UTP--glucose-1-phosphate uridylyltransferase OS=Mus musculus GN=Ugp2 PE=2 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 2.976e-36
Identity = 74/114 (64.91%), Postives = 93/114 (81.58%), Query Frame = -1
Query:   22 RPRYCMEVTPKTLADVKGGTLISYEGKVKLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVD-GIKVLQLETAAGAAIRFFDHAIGCNVP 360
            R  + MEVT KT ADVKGGTL  YEGK++L+EIAQVP  HV+EFKS+ KFKIFNTNNLW++L A+KRL E +A+ MEII NPK +D G+ V+QLETA GAAI+ F++++G NVP
Sbjct:  275 RCEFVMEVTNKTRADVKGGTLTQYEGKLRLVEIAQVPKAHVDEFKSVSKFKIFNTNNLWISLGAVKRLQEQNAIDMEIIVNPKTLDGGLNVIQLETAVGAAIKSFENSLGINVP 388          
BLAST of GE213474 vs. ExPASy Swiss-Prot
Match: UGPA1_YEAST (UTP--glucose-1-phosphate uridylyltransferase OS=Saccharomyces cerevisiae GN=UGP1 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.976e-36
Identity = 78/114 (68.42%), Postives = 92/114 (80.70%), Query Frame = -1
Query:   22 YCMEVTPKTLADVKGGTLISYEGKVKLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKEV--DG--IKVLQLETAAGAAIRFFDHAIGCNVP 351
            Y ME+T KT ADVKGGTLISY+G+V+LLE+AQVP EH++EFK+I KF  FNTNNLW+NLKA+KRL+E+  L+MEIIPN K +  DG  I VLQLETA GAAIR FD A G  VP
Sbjct:  267 YIMELTDKTRADVKGGTLISYDGQVRLLEVAQVPKEHIDEFKNIRKFTNFNTNNLWINLKAVKRLIESSNLEMEIIPNQKTITRDGHEINVLQLETACGAAIRHFDGAHGVVVP 380          
The following BLAST results are available for this feature:
BLAST of GE213474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
UGPA2_ARATH2.862e-5590.60Probable UTP--glucose-1-phosphate uridylyltransfer... [more]
UGPA1_ARATH2.862e-5590.60UTP--glucose-1-phosphate uridylyltransferase 1 OS=... [more]
UGPA_MUSAC3.738e-5595.45UTP--glucose-1-phosphate uridylyltransferase OS=Mu... [more]
UGPA_SOLTU1.088e-5489.74UTP--glucose-1-phosphate uridylyltransferase OS=So... [more]
UGPA_PYRPY1.855e-5488.89UTP--glucose-1-phosphate uridylyltransferase OS=Py... [more]
UGPA_ASTPN4.133e-5494.55UTP--glucose-1-phosphate uridylyltransferase OS=As... [more]
UGPA_HORVU4.570e-5387.18UTP--glucose-1-phosphate uridylyltransferase OS=Ho... [more]
UGPA_CRIGR2.278e-3664.91UTP--glucose-1-phosphate uridylyltransferase OS=Cr... [more]
UGPA_MOUSE2.976e-3664.91UTP--glucose-1-phosphate uridylyltransferase OS=Mu... [more]
UGPA1_YEAST2.976e-3668.42UTP--glucose-1-phosphate uridylyltransferase OS=Sa... [more]

Pages

back to top
Properties
Property NameValue
Genbank description354 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.