GE213471

Overview
NameGE213471
Unique NameGE213471
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213471 vs. ExPASy Swiss-Prot
Match: ACOC_SOLTU (Aconitate hydratase, cytoplasmic (Fragment) OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.998e-23
Identity = 50/54 (92.59%), Postives = 54/54 (100.00%), Query Frame = 1
Query:   22 RYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRV 183
            +YLNQQGF+IVGYGCTTCIGNSGDLDESVA+AI+ENDIVAAAVLSGNRNFEGRV
Sbjct:  211 KYLNQQGFNIVGYGCTTCIGNSGDLDESVASAISENDIVAAAVLSGNRNFEGRV 264          
BLAST of GE213471 vs. ExPASy Swiss-Prot
Match: ACOC_CUCMA (Aconitate hydratase, cytoplasmic OS=Cucurbita maxima PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.526e-23
Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = 1
Query:   25 YLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRV 183
            YLNQQGFHIVGYGCTTCIGNSGDLDESV+ AI++NDIVAAAVLSGNRNFEGRV
Sbjct:  494 YLNQQGFHIVGYGCTTCIGNSGDLDESVSAAISDNDIVAAAVLSGNRNFEGRV 546          
BLAST of GE213471 vs. ExPASy Swiss-Prot
Match: ACOC_ORYSJ (Putative aconitate hydratase, cytoplasmic OS=Oryza sativa subsp. japonica GN=Os08g0191100 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.899e-22
Identity = 47/53 (88.68%), Postives = 52/53 (98.11%), Query Frame = 1
Query:   25 YLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRV 183
            YLN+QGFH+VGYGCTTCIGNSGDLDESV+ AI+END+VAAAVLSGNRNFEGRV
Sbjct:  494 YLNKQGFHVVGYGCTTCIGNSGDLDESVSAAISENDVVAAAVLSGNRNFEGRV 546          
BLAST of GE213471 vs. ExPASy Swiss-Prot
Match: ACOC_CUCMC (Aconitate hydratase (Fragment) OS=Cucumis melo var. conomon GN=ACO PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.231e-21
Identity = 48/54 (88.89%), Postives = 52/54 (96.30%), Query Frame = 1
Query:   22 RYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRV 183
            +YLNQ GF+IVGYGCTTCIGNSGD+DESVA+AIT NDIVAAAVLSGNRNFEGRV
Sbjct:  358 KYLNQLGFNIVGYGCTTCIGNSGDIDESVASAITGNDIVAAAVLSGNRNFEGRV 411          
BLAST of GE213471 vs. ExPASy Swiss-Prot
Match: ACO2M_ARATH (Aconitate hydratase 2, mitochondrial OS=Arabidopsis thaliana GN=ACO2 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 4.678e-21
Identity = 46/53 (86.79%), Postives = 51/53 (96.23%), Query Frame = 1
Query:   25 YLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRV 183
            YLN+QGF+IVGYGCTTCIGNSG+++ESV  AITENDIVAAAVLSGNRNFEGRV
Sbjct:  586 YLNEQGFNIVGYGCTTCIGNSGEINESVGAAITENDIVAAAVLSGNRNFEGRV 638          
BLAST of GE213471 vs. ExPASy Swiss-Prot
Match: ACO1_ARATH (Aconitate hydratase 1 OS=Arabidopsis thaliana GN=ACO1 PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 1.505e-19
Identity = 43/54 (79.63%), Postives = 50/54 (92.59%), Query Frame = 1
Query:   22 RYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRV 183
            +YLNQ GF IVGYGCTTCIGNSGD+ E+VA+AI +ND+VA+AVLSGNRNFEGRV
Sbjct:  493 KYLNQLGFSIVGYGCTTCIGNSGDIHEAVASAIVDNDLVASAVLSGNRNFEGRV 546          
BLAST of GE213471 vs. ExPASy Swiss-Prot
Match: ACO3M_ARATH (Aconitate hydratase 3, mitochondrial OS=Arabidopsis thaliana GN=ACO3 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.557e-16
Identity = 40/52 (76.92%), Postives = 44/52 (84.62%), Query Frame = 1
Query:   28 LNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRV 183
            L +QGF IVGYGCTTCIGNSG+LD  VA+AI   DI+ AAVLSGNRNFEGRV
Sbjct:  592 LTKQGFEIVGYGCTTCIGNSGNLDPEVASAIEGTDIIPAAVLSGNRNFEGRV 643          
BLAST of GE213471 vs. ExPASy Swiss-Prot
Match: ACOC_CHICK (Cytoplasmic aconitate hydratase OS=Gallus gallus GN=ACO1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.918e-16
Identity = 38/53 (71.70%), Postives = 43/53 (81.13%), Query Frame = 1
Query:   25 YLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRV 183
            YL+Q GF +VGYGC TCIGNSG L +SV  AIT+ D+VA  VLSGNRNFEGRV
Sbjct:  490 YLSQLGFDVVGYGCMTCIGNSGPLPDSVVEAITQGDLVAVGVLSGNRNFEGRV 542          
BLAST of GE213471 vs. ExPASy Swiss-Prot
Match: ACON_STRMU (Aconitate hydratase OS=Streptococcus mutans GN=acn PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 7.729e-16
Identity = 37/53 (69.81%), Postives = 45/53 (84.91%), Query Frame = 1
Query:   25 YLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRV 183
            YL++ GF++VGYGCTTCIGNSGDL   VA A+ E D++ +AVLSGNRNFEGRV
Sbjct:  486 YLDKLGFNLVGYGCTTCIGNSGDLVPEVAKAVQEKDLLVSAVLSGNRNFEGRV 538          
BLAST of GE213471 vs. ExPASy Swiss-Prot
Match: ACOC_RAT (Cytoplasmic aconitate hydratase OS=Rattus norvegicus GN=Aco1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.009e-15
Identity = 38/53 (71.70%), Postives = 42/53 (79.25%), Query Frame = 1
Query:   25 YLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRV 183
            YL+Q GF +VGYGC TCIGNSG L E V  AIT+ D+VA  VLSGNRNFEGRV
Sbjct:  490 YLSQLGFDVVGYGCMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEGRV 542          
The following BLAST results are available for this feature:
BLAST of GE213471 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
ACOC_SOLTU4.998e-2392.59Aconitate hydratase, cytoplasmic (Fragment) OS=Sol... [more]
ACOC_CUCMA8.526e-2392.45Aconitate hydratase, cytoplasmic OS=Cucurbita maxi... [more]
ACOC_ORYSJ1.899e-2288.68Putative aconitate hydratase, cytoplasmic OS=Oryza... [more]
ACOC_CUCMC1.231e-2188.89Aconitate hydratase (Fragment) OS=Cucumis melo var... [more]
ACO2M_ARATH4.678e-2186.79Aconitate hydratase 2, mitochondrial OS=Arabidopsi... [more]
ACO1_ARATH1.505e-1979.63Aconitate hydratase 1 OS=Arabidopsis thaliana GN=A... [more]
ACO3M_ARATH1.557e-1676.92Aconitate hydratase 3, mitochondrial OS=Arabidopsi... [more]
ACOC_CHICK5.918e-1671.70Cytoplasmic aconitate hydratase OS=Gallus gallus G... [more]
ACON_STRMU7.729e-1669.81Aconitate hydratase OS=Streptococcus mutans GN=acn... [more]
ACOC_RAT1.009e-1571.70Cytoplasmic aconitate hydratase OS=Rattus norvegic... [more]

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Properties
Property NameValue
Genbank description351 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.