GE213469

Overview
NameGE213469
Unique NameGE213469
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8722 contig Csv1_Contig8722:431..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213469 vs. ExPASy Swiss-Prot
Match: GGH_ARATH (Gamma-glutamyl hydrolase OS=Arabidopsis thaliana GN=GGH PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 1.462e-30
Identity = 58/87 (66.67%), Postives = 76/87 (87.36%), Query Frame = 1
Query:   13 RPGRYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVSEDRNILETFDGANQASTLQFVKNINIEGTLFQRFPQELLKKLST 273
            + G Y++IV+KIF K+LE+NDAG+HFP+YAICLGFELL+MI+S++R+I E  D  N AS+LQFV+N+NI+GT+FQRFP ELLKKL T
Sbjct:  124 KEGLYFEIVKKIFNKVLERNDAGEHFPIYAICLGFELLTMIISQNRDIFEKMDARNSASSLQFVENVNIQGTIFQRFPPELLKKLGT 210          
BLAST of GE213469 vs. ExPASy Swiss-Prot
Match: GGH_SOYBN (Gamma-glutamyl hydrolase OS=Glycine max PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.050e-16
Identity = 44/85 (51.76%), Postives = 55/85 (64.71%), Query Frame = 1
Query:   19 GRYYDIVEKIFKKILEKNDAGDHFPVYAICLGFELLSMIVSEDRNILETFDGANQASTLQFVKNINIEGTLFQRFPQELLKKLST 273
            G Y D +  IFKK LE+NDAGDHFPV A  LG  L+  IVSE  +ILE F  ++  S+L      N +G+LFQRFP +LL +L T
Sbjct:  126 GPYLDTLGNIFKKALERNDAGDHFPVIAFNLGGNLVIRIVSEQTDILEPFTASSLPSSLVLWNEANAKGSLFQRFPSDLLTQLKT 210          
The following BLAST results are available for this feature:
BLAST of GE213469 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GGH_ARATH1.462e-3066.67Gamma-glutamyl hydrolase OS=Arabidopsis thaliana G... [more]
GGH_SOYBN2.050e-1651.76Gamma-glutamyl hydrolase OS=Glycine max PE=2 SV=1[more]
back to top
Properties
Property NameValue
Genbank description349 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.