GE213465

Overview
NameGE213465
Unique NameGE213465
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13719 contig Csv1_Contig13719:1..807. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213465 vs. ExPASy Swiss-Prot
Match: LARP7_DANRE (La-related protein 7 OS=Danio rerio GN=larp7 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.881e-15
Identity = 48/161 (29.81%), Postives = 87/161 (54.04%), Query Frame = -2
Query:   21 CEDPIKDHENSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRESSLLVVSSNGKKVRRLNPLPVTEVRDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIRDPNVVEESKKSSKYEY 503
            C D  +  +N          L   + KQVE++F D NL  D++M ++I ++++G++ I+V+ +F ++K LT +   I  AL+ S+++ V+  G ++RR  PL  T  +D    TV VE LP+  +   ++R+F++ G +  I I        SK  +  E+
Sbjct:   22 CADLSEKKDNEKKKRSRVKQLLSDVKKQVEFWFGDVNLHKDRFMKSIIEQSRDGYIDIAVLTTFNRMKNLTADVKLIARALKNSTIVEVNDEGTRIRRKEPLGETP-KDVDSRTVYVELLPKTVTHIWLERVFSKCGHVVYISIPRYKSTRHSKGFAFVEF 181          
BLAST of GE213465 vs. ExPASy Swiss-Prot
Match: LARP7_MOUSE (La-related protein 7 OS=Mus musculus GN=Larp7 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.208e-15
Identity = 44/120 (36.67%), Postives = 74/120 (61.67%), Query Frame = -2
Query:   72 IIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRESSLLVVSSNGKKVRRLNPLPVTEVRDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICI 431
            I KQV+++F D NL  DK++   I K+++G+V IS++ SF K+K+LT +   I  AL+ SS++ +   G ++RR  PL     +D +  TV VE LP++ +   ++R+F + G +  I I
Sbjct:   32 IAKQVDFWFGDANLHKDKFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALKSSSVVELDLEGTRIRRKKPLG-ERPKDEEERTVYVELLPKNVTHSWIERVFGKCGNVVYISI 150          
BLAST of GE213465 vs. ExPASy Swiss-Prot
Match: LAH1_YEAST (La protein homolog OS=Saccharomyces cerevisiae GN=LAH1 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 5.472e-15
Identity = 50/152 (32.89%), Postives = 84/152 (55.26%), Query Frame = -2
Query:   69 KDHENSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRESSLLVVSSNGKKVRRLNPLPVTEVRDPKL----FTVLVENLPED--------HSVENMQRIFAEAGKIKSICIR 488
            +   NS      T ++  R +KQVE+YFS+ N P D+++     KN +G+VPIS IA+F ++K+  R    ++ ALR S +L VS++G+ V+R  PL +T  R+ ++     T+ V N P +           EN++  F + G+I  + +R
Sbjct:   14 QSRRNSFAVIEFTPEVLDRCLKQVEFYFSEFNFPYDRFLRTTAEKN-DGWVPISTIATFNRMKKY-RPVDKVIEALRSSEILEVSADGENVKRRVPLDLTAARNARIEQNQRTLAVMNFPHEDVEASQIPELQENLEAFFKKLGEINQVRLR 163          
BLAST of GE213465 vs. ExPASy Swiss-Prot
Match: LARP7_RAT (La-related protein 7 OS=Rattus norvegicus GN=Larp7 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 7.146e-15
Identity = 43/120 (35.83%), Postives = 74/120 (61.67%), Query Frame = -2
Query:   72 IIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRESSLLVVSSNGKKVRRLNPLPVTEVRDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICI 431
            I KQV+++F D NL  D+++   I K+++G+V IS++ SF K+K+LT +   I  AL+ SS++ +   G ++RR  PL     +D +  TV VE LP++ +   ++R+F + G +  I I
Sbjct:   33 IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALKSSSVVELDLEGTRIRRKKPLG-ERPKDEEERTVYVELLPKNVTHSWIERVFGKCGNVVYISI 151          
BLAST of GE213465 vs. ExPASy Swiss-Prot
Match: LARP7_MACFA (La-related protein 7 OS=Macaca fascicularis GN=LARP7 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.146e-15
Identity = 47/140 (33.57%), Postives = 80/140 (57.14%), Query Frame = -2
Query:   72 IKDHENSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRESSLLVVSSNGKKVRRLNPLPVTEVRDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICI 491
            ++  + S    VL D     I KQV+++F D NL  D+++   I K+++G+V IS++ SF K+K+LT +   I  ALR S+++ +   G ++RR  PL     +D    TV VE LP++ +   ++R+F + G +  I I
Sbjct:   23 VEKKKRSRVKQVLAD-----IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALRSSAVVELDLEGTRIRRKKPLG-ERPKDEDERTVYVELLPKNVNHSWIERVFGKCGNVVYISI 156          
BLAST of GE213465 vs. ExPASy Swiss-Prot
Match: LARP7_HUMAN (La-related protein 7 OS=Homo sapiens GN=LARP7 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.146e-15
Identity = 47/140 (33.57%), Postives = 80/140 (57.14%), Query Frame = -2
Query:   72 IKDHENSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRESSLLVVSSNGKKVRRLNPLPVTEVRDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICI 491
            ++  + S    VL D     I KQV+++F D NL  D+++   I K+++G+V IS++ SF K+K+LT +   I  ALR S+++ +   G ++RR  PL     +D    TV VE LP++ +   ++R+F + G +  I I
Sbjct:   23 VEKKKRSRVKQVLAD-----IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALRSSAVVELDLEGTRIRRKKPLG-ERPKDEDERTVYVELLPKNVNHSWIERVFGKCGNVVYISI 156          
BLAST of GE213465 vs. ExPASy Swiss-Prot
Match: LARP7_XENTR (La-related protein 7 OS=Xenopus tropicalis GN=larp7 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.592e-14
Identity = 46/139 (33.09%), Postives = 81/139 (58.27%), Query Frame = -2
Query:   72 KDHENSSTPAVLTDDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRESSLLVVSSNGKKVRRLNPLPVTEVRDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICI 488
            KD E      V    L   I KQV+++F D NL  D+++   I K ++G++ IS++ASF K+K++T +   I  A++ SS++ ++ +G K+RR  PL   + +D    TV VE LP++ +   ++R+F + G +  + I
Sbjct:   23 KDREKKKRSRV--KQLLADIAKQVDFWFGDVNLHKDRFLREQIEKTRDGYIDISLLASFNKMKKITTDSKLIARAVKNSSVVEINLSGTKIRRRFPLG-EKPQDVDSRTVYVELLPKNVTHSWIERVFGKYGMVVYVSI 158          
BLAST of GE213465 vs. ExPASy Swiss-Prot
Match: LARP6_MOUSE (La-related protein 6 OS=Mus musculus GN=Larp6 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.547e-14
Identity = 48/176 (27.27%), Postives = 90/176 (51.14%), Query Frame = -2
Query:   63 EDPIKDHENSSTPAVLTD-------------DLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRESSLLVVSSNGKKVRRLNPLPVTEVRD--------------PKLFTVLV---ENLPEDHSVENMQRIFAEAGKIKSICIRDP 500
            E+P + H +++T     D             +L ++++ Q+E+YFSDENL  D +++  +R+NK G+V + ++ SF+K+K LTR+      AL+ S  L ++ + +KVRR  P+P+    +              PKL+ +         ++  +E++ ++F   G I S+ I  P
Sbjct:   60 EEPSRGHSSATTSGGENDREDLEPEWRPPDEELIRKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRTTAHALKYSVTLELNEDHRKVRRTTPVPLFPNENLPSKMLLVYDLHLSPKLWALATPQKNGRVQEKVMEHLLKLFGTFGVISSVRILKP 235          
BLAST of GE213465 vs. ExPASy Swiss-Prot
Match: LARP6_HUMAN (La-related protein 6 OS=Homo sapiens GN=LARP6 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.547e-14
Identity = 43/146 (29.45%), Postives = 82/146 (56.16%), Query Frame = -2
Query:   63 DDLKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRESSLLVVSSNGKKVRRLNPLPVTEVRD--------------PKLFTVLV---ENLPEDHSVENMQRIFAEAGKIKSICIRDP 449
            ++L ++++ Q+E+YFSDENL  D +++  +R+NK G+V + ++ SF+K+K LTR+      AL+ S +L ++ + +KVRR  P+P+    +              PKL+ +         ++  +E++ ++F   G I S+ I  P
Sbjct:   90 EELIKKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRTTAHALKYSVVLELNEDHRKVRRTTPVPLFPNENLPSKMLLVYDLYLSPKLWALATPQKNGRVQEKVMEHLLKLFGTFGVISSVRILKP 235          
BLAST of GE213465 vs. ExPASy Swiss-Prot
Match: LA_RAT (Lupus La protein homolog OS=Rattus norvegicus GN=Ssb PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.736e-13
Identity = 47/132 (35.61%), Postives = 77/132 (58.33%), Query Frame = -2
Query:   69 LKQRIIKQVEYYFSDENLPTDKYMMNLIRKNKEGFVPISVIASFRKLKRLTRNHAWIVAALRES--SLLVVSSNGKKVRRLNPLPVTEV-----RDPKLFTVLVENLPEDHSVENMQRIFAEAGKIKSICIR 443
            L+ +I  Q+EYYF D NLP DK++   I K  EG+VP+  +  F +L RLT +   IV AL +S  +L+ VS++  K+RR    P+ EV      D K  +V ++  P D ++++++    + G+I +I +R
Sbjct:   13 LEAKICHQIEYYFGDFNLPRDKFLKEQI-KLDEGWVPLETMIKFNRLNRLTTDFNVIVQALSKSKANLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLDDKGQILNIQMR 143          
The following BLAST results are available for this feature:
BLAST of GE213465 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
LARP7_DANRE1.881e-1529.81La-related protein 7 OS=Danio rerio GN=larp7 PE=2 ... [more]
LARP7_MOUSE3.208e-1536.67La-related protein 7 OS=Mus musculus GN=Larp7 PE=1... [more]
LAH1_YEAST5.472e-1532.89La protein homolog OS=Saccharomyces cerevisiae GN=... [more]
LARP7_RAT7.146e-1535.83La-related protein 7 OS=Rattus norvegicus GN=Larp7... [more]
LARP7_MACFA7.146e-1533.57La-related protein 7 OS=Macaca fascicularis GN=LAR... [more]
LARP7_HUMAN7.146e-1533.57La-related protein 7 OS=Homo sapiens GN=LARP7 PE=1... [more]
LARP7_XENTR1.592e-1433.09La-related protein 7 OS=Xenopus tropicalis GN=larp... [more]
LARP6_MOUSE3.547e-1427.27La-related protein 6 OS=Mus musculus GN=Larp6 PE=1... [more]
LARP6_HUMAN3.547e-1429.45La-related protein 6 OS=Homo sapiens GN=LARP6 PE=1... [more]
LA_RAT8.736e-1335.61Lupus La protein homolog OS=Rattus norvegicus GN=S... [more]

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Properties
Property NameValue
Genbank description345 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.