GE213460

Overview
NameGE213460
Unique NameGE213460
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig185 contig Csv1_Contig185:116..558. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213460 vs. ExPASy Swiss-Prot
Match: XTH28_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 2.560e-63
Identity = 106/132 (80.30%), Postives = 123/132 (93.18%), Query Frame = 2
Query:   26 RNLPIVPFDEGYSHLFGHDNLVVHRDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYIAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQY 421
            + LP++ FDEGY+ LFG  NL+VHRDGKSV L+LDERTGSGFVS+D+YLHGFFS+SIKLPADY AGVV+AFY+SNGD++EKNHDEIDFEFLGNIRG+ WRIQTNIYGNGST +GREERYNLWFDP++DFHQY
Sbjct:   24 QKLPLIQFDEGYTQLFGDQNLIVHRDGKSVRLTLDERTGSGFVSNDIYLHGFFSSSIKLPADYSAGVVIAFYLSNGDLYEKNHDEIDFEFLGNIRGREWRIQTNIYGNGSTHLGREERYNLWFDPTEDFHQY 155          
BLAST of GE213460 vs. ExPASy Swiss-Prot
Match: XTH27_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 27 OS=Arabidopsis thaliana GN=XTH27 PE=2 SV=2)

HSP 1 Score: 233.032 bits (593), Expect = 4.088e-61
Identity = 107/132 (81.06%), Postives = 118/132 (89.39%), Query Frame = 2
Query:   26 RNLPIVPFDEGYSHLFGHDNLVVHRDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYIAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQY 421
            +NLPI  F+E Y+ LFG  NL VH+DGKSV L+LDERTGSGFVS+D YLHGFFSASIKLP+DY AGVVVAFYMSNGDM+EKNHDEIDFEFLGNIR K WR+QTNIYGNGST  GREERYNLWFDP++DFHQY
Sbjct:   24 QNLPITSFEESYTQLFGDKNLFVHQDGKSVRLTLDERTGSGFVSNDYYLHGFFSASIKLPSDYTAGVVVAFYMSNGDMYEKNHDEIDFEFLGNIREKEWRVQTNIYGNGSTHSGREERYNLWFDPTEDFHQY 155          
BLAST of GE213460 vs. ExPASy Swiss-Prot
Match: XTH30_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 30 OS=Arabidopsis thaliana GN=XTH30 PE=2 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 2.572e-47
Identity = 89/137 (64.96%), Postives = 103/137 (75.18%), Query Frame = 2
Query:   11 SRPRYRNLPIVPFDEGYSHLFGHDNLVVHRDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYIAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQY 421
            S   + NL  + F+E  S LFG  NLV   D  SV L LD  TGSGF+S ++Y HGF+S+ IKLPADY AGVVVAFY SNGD+FEK HDE+D EFLGNI+GK WR QTN+YGNGST  GREERY LWFDPS +FH+Y
Sbjct:   20 SSSAFTNLNTLSFEESLSPLFGDANLVRSPDDLSVRLLLDRYTGSGFISSNMYQHGFYSSMIKLPADYTAGVVVAFYTSNGDVFEKTHDELDIEFLGNIKGKPWRFQTNLYGNGSTHRGREERYRLWFDPSKEFHRY 156          
BLAST of GE213460 vs. ExPASy Swiss-Prot
Match: XTH29_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 29 OS=Arabidopsis thaliana GN=XTH29 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 5.730e-47
Identity = 85/131 (64.89%), Postives = 102/131 (77.86%), Query Frame = 2
Query:   29 NLPIVPFDEGYSHLFGHDNLVVHRDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYIAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQY 421
            N+  + FDEG SHLFG  NL+   D +SV L LD+ TGSGF+S  +Y HGFFS+ IKLP  Y AG+VVAFY SNGD+F K+HDE+D EFLGN+ GK WR QTN+YGNGST+ GREERY LWFDPS +FH+Y
Sbjct:   34 NINPIFFDEGLSHLFGEGNLIRSPDDRSVRLLLDKYTGSGFISSSMYQHGFFSSLIKLPGAYTAGIVVAFYTSNGDVFVKDHDELDIEFLGNLEGKPWRFQTNMYGNGSTNRGREERYRLWFDPSKEFHRY 164          
BLAST of GE213460 vs. ExPASy Swiss-Prot
Match: XTH33_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 33 OS=Arabidopsis thaliana GN=XTH33 PE=2 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 8.033e-33
Identity = 64/127 (50.39%), Postives = 87/127 (68.50%), Query Frame = 2
Query:   41 VPFDEGYSHLFGHDNLVVHRDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYIAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQY 421
            +  + G+S  FG  N+ V+  G    L+LD+ +G+G VS + Y +GFFSA +KLPA + +GVVVAFY+SN + + K+HDEID E LG  R  +W IQTN+Y NGST  GREE++  WFDP+  FH Y
Sbjct:   41 IAIENGFSRRFGAHNIQVN--GSLAKLTLDKSSGAGLVSKNKYHYGFFSARLKLPAGFASGVVVAFYLSNAETYPKSHDEIDIELLGRSRRDDWTIQTNVYANGSTRTGREEKFYFWFDPTQAFHDY 165          
BLAST of GE213460 vs. ExPASy Swiss-Prot
Match: XTH2_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 2 OS=Arabidopsis thaliana GN=XTH2 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.242e-25
Identity = 64/135 (47.41%), Postives = 80/135 (59.26%), Query Frame = 2
Query:   20 RYRNLPIVPFDEGYSHLFGHDNLVVHRDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYIAGVVVAFYM-SNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQY 421
            R R    + FD  Y   +G D+++    GK V LS+D  +GSGF S   Y  GFF   IKLP    AGVV AFY+ S GD     HDE+DFEFLGN +GK   IQTN++ NG    GRE+++  WFDP+  FH Y
Sbjct:   23 RARGRGAIDFDVNYVVTWGQDHILKLNQGKEVQLSMDYSSGSGFESKSHYGSGFFQMRIKLPPRDSAGVVTAFYLTSKGD----THDEVDFEFLGNRQGKPIAIQTNVFSNGQG--GREQKFVPWFDPTTSFHTY 151          
BLAST of GE213460 vs. ExPASy Swiss-Prot
Match: XTH5_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 5 OS=Arabidopsis thaliana GN=XTH5 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.767e-25
Identity = 60/127 (47.24%), Postives = 78/127 (61.42%), Query Frame = 2
Query:   41 VPFDEGYSHLFGHDNLVVHRDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYIAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQY 421
            VPF   Y   +  D++     G  VHL LD+ TG+GF S   YL G FS  IK+ A   AG V AFY+S+ +     HDEIDFEFLGN  G+ + +QTN++  G+ +  RE+R NLWFDPS D+H Y
Sbjct:   30 VPFGRNYFPTWAFDHIKYLNGGSEVHLVLDKYTGTGFQSKGSYLFGHFSMHIKMVAGDSAGTVTAFYLSSQN---SEHDEIDFEFLGNRTGQPYILQTNVFTGGAGN--REQRINLWFDPSKDYHSY 151          
BLAST of GE213460 vs. ExPASy Swiss-Prot
Match: XTH1_ARATH (Putative xyloglucan endotransglucosylase/hydrolase protein 1 OS=Arabidopsis thaliana GN=XTH1 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 8.052e-25
Identity = 60/127 (47.24%), Postives = 79/127 (62.20%), Query Frame = 2
Query:   41 VPFDEGYSHLFGHDNLVVHRDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYIAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQY 421
            V FD+ Y   +G +N++    GK V LSLD  +GSGF S + Y  GFF   IK+P    +GVV AFY+++       HDE+DFEFLGN  GK   +QTN++ NG  +  RE++  LWFDPS DFH Y
Sbjct:   37 VGFDDNYVVTWGQNNVLKLNQGKEVQLSLDHSSGSGFESKNHYESGFFQIRIKVPPKDTSGVVTAFYLTSKG---NTHDEVDFEFLGNKEGK-LAVQTNVFTNGKGN--REQKLALWFDPSKDFHTY 157          
BLAST of GE213460 vs. ExPASy Swiss-Prot
Match: XTH_WHEAT (Probable xyloglucan endotransglucosylase/hydrolase OS=Triticum aestivum GN=XTH PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.373e-24
Identity = 58/127 (45.67%), Postives = 77/127 (60.63%), Query Frame = 2
Query:   41 VPFDEGYSHLFGHDNLVVHRDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYIAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQY 421
            VPFD+ Y   +  D++     G+ V LSLD+ TG+GF +   YL G FS  IKL     AG V AFY+S+ +     HDEIDFEFLGN  G+ + +QTN++  G     RE+R  LWFDP+ D+H Y
Sbjct:   30 VPFDKNYVPTWAQDHIHYVNGGREVQLSLDKTTGTGFQTRGSYLFGHFSMHIKLVGGDSAGTVTAFYLSSQN---SEHDEIDFEFLGNRTGQPYILQTNVFSGGKGD--REQRIYLWFDPTKDYHSY 151          
BLAST of GE213460 vs. ExPASy Swiss-Prot
Match: XTH31_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 31 OS=Arabidopsis thaliana GN=XTH31 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 3.060e-24
Identity = 59/133 (44.36%), Postives = 78/133 (58.65%), Query Frame = 2
Query:   32 LPIVPFDEGYSHLFGHDNLVVHRDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYIAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGS---TSIGREERYNLWFDPSDDFHQY 421
            +P  PFD  +  L+G  +    R+   V L LD+ TGSGF S   Y  G+F ASIKL   + AGV  + Y+SN      +HDE+D EFLG   GK + +QTN++  GS     IGRE ++ LWFDP+ DFH Y
Sbjct:   34 VPTSPFDREFRTLWGSQHQ--RREQDVVTLWLDKSTGSGFKSLRPYRSGYFGASIKLQPGFTAGVDTSLYLSNNQEHPGDHDEVDIEFLGTTPGKPYSLQTNVFVRGSGDRNVIGREMKFTLWFDPTQDFHHY 164          
The following BLAST results are available for this feature:
BLAST of GE213460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
XTH28_ARATH2.560e-6380.30Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH27_ARATH4.088e-6181.06Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH30_ARATH2.572e-4764.96Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH29_ARATH5.730e-4764.89Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH33_ARATH8.033e-3350.39Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH2_ARATH1.242e-2547.41Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH5_ARATH2.767e-2547.24Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH1_ARATH8.052e-2547.24Putative xyloglucan endotransglucosylase/hydrolase... [more]
XTH_WHEAT1.373e-2445.67Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH31_ARATH3.060e-2444.36Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank description340 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.