GE213459

Overview
NameGE213459
Unique NameGE213459
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12117 contig Csv1_Contig12117:428..725. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of GE213459 vs. ExPASy Swiss-Prot
Match: LE14B_PRUAR (LEC14B homolog OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.248e-13
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 3 
Query:   24 YHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRRRQ 176
            +H  PVRDCSWHP  PMLVSSSWDG + RWEFPG+ +  P L + R RR++
Sbjct:  423 HHEGPVRDCSWHPLYPMLVSSSWDGTIARWEFPGD-DQVPTLERPRARRKE 472
[Close]
BLAST of GE213459 vs. ExPASy Swiss-Prot
Match: LE14B_LITER (LEC14B protein OS=Lithospermum erythrorhizon PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.380e-12
Identity = 29/50 (58.00%), Postives = 40/50 (80.00%), Query Frame = 3 
Query:   21 RYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRR 170
            +YH + VRDCSWHP+ PMLVSSS+DG++V+WE+ GN EA    N +R++R
Sbjct:  424 QYHKATVRDCSWHPNYPMLVSSSFDGEIVKWEYRGNDEAPVQGNNQRLQR 473
The following BLAST results are available for this feature:
BLAST of GE213459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
LE14B_PRUAR1.248e-1360.78LEC14B homolog OS=Prunus armeniaca PE=2 SV=1[more]
LE14B_LITER1.380e-1258.00LEC14B protein OS=Lithospermum erythrorhizon PE=2 ... [more]
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Properties
Property NameValue
Genbank description339 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.