GE213458

Overview
NameGE213458
Unique NameGE213458
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8225 contig Csv1_Contig8225:587..836. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213458 vs. ExPASy Swiss-Prot
Match: LEU3_SOLTU (3-isopropylmalate dehydrogenase, chloroplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 9.605e-35
Identity = 71/72 (98.61%), Postives = 71/72 (98.61%), Query Frame = -2
Query:   22 GRYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKY 237
            G YSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKY
Sbjct:  156 GEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKY 227          
BLAST of GE213458 vs. ExPASy Swiss-Prot
Match: IDH5_ARATH (Isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial OS=Arabidopsis thaliana GN=IDH5 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.811e-33
Identity = 70/72 (97.22%), Postives = 70/72 (97.22%), Query Frame = -2
Query:   22 GRYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKY 237
            G YSGLEHQVVRGVVESLKIITRQASLRVAEYAF YAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKY
Sbjct:  163 GEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFLYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKY 234          
BLAST of GE213458 vs. ExPASy Swiss-Prot
Match: IDH6_ARATH (Isocitrate dehydrogenase [NAD] catalytic subunit 6, mitochondrial OS=Arabidopsis thaliana GN=IDH6 PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 1.215e-29
Identity = 62/72 (86.11%), Postives = 68/72 (94.44%), Query Frame = -2
Query:   22 GRYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKY 237
            G YSGLEHQVV+GVVESLKIITR+AS+RVAEYAF YAKTHGR++VSAIHKANIMQKTDGLFL+CC EVA KY
Sbjct:  163 GEYSGLEHQVVKGVVESLKIITRKASMRVAEYAFLYAKTHGRKKVSAIHKANIMQKTDGLFLQCCDEVAAKY 234          
BLAST of GE213458 vs. ExPASy Swiss-Prot
Match: IDH3G_BOVIN (Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial OS=Bos taurus GN=IDH3G PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.218e-21
Identity = 48/72 (66.67%), Postives = 59/72 (81.94%), Query Frame = -2
Query:   22 GRYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKY 237
            G YS LEH+ V GVVESLKIIT+  SLR+AEYAF  A+  GR++V+A+HKANIM+  DGLFL+CCREVA +Y
Sbjct:  171 GEYSSLEHESVAGVVESLKIITKAKSLRIAEYAFQLAQESGRKKVTAVHKANIMKLGDGLFLQCCREVAARY 242          
BLAST of GE213458 vs. ExPASy Swiss-Prot
Match: IDH3G_RAT (Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial OS=Rattus norvegicus GN=Idh3g PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 1.591e-21
Identity = 48/72 (66.67%), Postives = 59/72 (81.94%), Query Frame = -2
Query:   22 GRYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKY 237
            G YS LEH+ V GVVESLKIIT+  SLR+AEYAF  A+  GR++V+A+HKANIM+  DGLFL+CCREVA +Y
Sbjct:  172 GEYSSLEHESVAGVVESLKIITKAKSLRIAEYAFKLAQESGRKKVTAVHKANIMKLGDGLFLQCCREVAARY 243          
BLAST of GE213458 vs. ExPASy Swiss-Prot
Match: IDH3G_MACFA (Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial (Fragment) OS=Macaca fascicularis GN=IDH3G PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.591e-21
Identity = 48/72 (66.67%), Postives = 59/72 (81.94%), Query Frame = -2
Query:   22 GRYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKY 237
            G YS LEH+ V GVVESLKIIT+  SLR+AEYAF  A+  GR++V+A+HKANIM+  DGLFL+CCREVA +Y
Sbjct:  134 GEYSSLEHESVAGVVESLKIITKAKSLRIAEYAFKLAQESGRKKVTAVHKANIMKLGDGLFLQCCREVAARY 205          
BLAST of GE213458 vs. ExPASy Swiss-Prot
Match: IDH3G_HUMAN (Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial OS=Homo sapiens GN=IDH3G PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.591e-21
Identity = 48/72 (66.67%), Postives = 59/72 (81.94%), Query Frame = -2
Query:   22 GRYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKY 237
            G YS LEH+ V GVVESLKIIT+  SLR+AEYAF  A+  GR++V+A+HKANIM+  DGLFL+CCREVA +Y
Sbjct:  172 GEYSSLEHESVAGVVESLKIITKAKSLRIAEYAFKLAQESGRKKVTAVHKANIMKLGDGLFLQCCREVAARY 243          
BLAST of GE213458 vs. ExPASy Swiss-Prot
Match: IDH3A_DROME (Probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Drosophila melanogaster GN=l(1)G0156 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.077e-21
Identity = 43/72 (59.72%), Postives = 62/72 (86.11%), Query Frame = -2
Query:   22 GRYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKY 237
            G YSG+EH++V GVV+S+K+IT +AS RVAEYAF YAK + R++V+ +HKANIM+ +DGLFL+C R++A+K+
Sbjct:  167 GEYSGIEHEIVDGVVQSIKLITEEASKRVAEYAFQYAKNNNRKKVTVVHKANIMRMSDGLFLRCVRDMAQKF 238          
BLAST of GE213458 vs. ExPASy Swiss-Prot
Match: IDH3G_MOUSE (Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial OS=Mus musculus GN=Idh3g PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.543e-21
Identity = 48/72 (66.67%), Postives = 58/72 (80.56%), Query Frame = -2
Query:   22 GRYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKY 237
            G YS LEH+ V GVVESLKIIT+  SLR+AEYAF  A+  GR++V+A+HKANIM+  DGLFL+CCREVA  Y
Sbjct:  172 GEYSSLEHESVAGVVESLKIITKAKSLRIAEYAFKLAQESGRKKVTAVHKANIMKLGDGLFLQCCREVAAHY 243          
BLAST of GE213458 vs. ExPASy Swiss-Prot
Match: IDH3_ARATH (Isocitrate dehydrogenase [NAD] regulatory subunit 3, mitochondrial OS=Arabidopsis thaliana GN=IDH3 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.894e-21
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = -2
Query:   16 GRYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYLG 237
            G YSGLEH+VV GVVESLK+IT+  S R+A YAF YA  + R++V+A+HKANIM+  DGLFL+ CREVA+ Y G
Sbjct:  153 GEYSGLEHEVVPGVVESLKVITKFCSERIARYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVAKHYSG 226          
The following BLAST results are available for this feature:
BLAST of GE213458 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
LEU3_SOLTU9.605e-3598.613-isopropylmalate dehydrogenase, chloroplastic OS=... [more]
IDH5_ARATH1.811e-3397.22Isocitrate dehydrogenase [NAD] catalytic subunit 5... [more]
IDH6_ARATH1.215e-2986.11Isocitrate dehydrogenase [NAD] catalytic subunit 6... [more]
IDH3G_BOVIN1.218e-2166.67Isocitrate dehydrogenase [NAD] subunit gamma, mito... [more]
IDH3G_RAT1.591e-2166.67Isocitrate dehydrogenase [NAD] subunit gamma, mito... [more]
IDH3G_MACFA1.591e-2166.67Isocitrate dehydrogenase [NAD] subunit gamma, mito... [more]
IDH3G_HUMAN1.591e-2166.67Isocitrate dehydrogenase [NAD] subunit gamma, mito... [more]
IDH3A_DROME2.077e-2159.72Probable isocitrate dehydrogenase [NAD] subunit al... [more]
IDH3G_MOUSE3.543e-2166.67Isocitrate dehydrogenase [NAD] subunit gamma, mito... [more]
IDH3_ARATH7.894e-2163.51Isocitrate dehydrogenase [NAD] regulatory subunit ... [more]

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Properties
Property NameValue
Genbank description338 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.