GE213454

Overview
NameGE213454
Unique NameGE213454
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12719 contig Csv1_Contig12719:388..839. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213454 vs. ExPASy Swiss-Prot
Match: ACYP_RHORT (Acylphosphatase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=acyP PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.406e-13
Identity = 38/69 (55.07%), Postives = 45/69 (65.22%), Query Frame = 3
Query:  228 FYRNWTIENATQLGLRGWVRNRRDGSVEALFSGNPDSVKEMEQRCRHGPPDAVVTGLQVFP--SNDDPG 428
            +YR WT+E A  LGL GWVRNR DG+VEALF G   +V+ M   CR GPP A V  L+V P  + D PG
Sbjct:   16 WYRGWTVETAKGLGLAGWVRNRADGTVEALFHGPEAAVEAMLIACRGGPPSARVDDLRVTPVAAPDQPG 84          
BLAST of GE213454 vs. ExPASy Swiss-Prot
Match: ACYP_SPHWW (Acylphosphatase OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=acyP PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.294e-12
Identity = 36/72 (50.00%), Postives = 45/72 (62.50%), Query Frame = 3
Query:  228 FYRNWTIENATQLGLRGWVRNRRDGSVEALFSGNPDSVKEMEQRCRHGPPDAVVTGLQVFPSNDDPGTCPGG 443
            ++R WT+E A +LGL GWVRNR DGSVEA+ +G  D V+EM  RCR G P + V  + V    D PG    G
Sbjct:   24 WFRAWTVEQAAELGLDGWVRNRADGSVEAVAAGPADRVEEMIARCRRGSPASRVDSIDV---EDTPGVVAQG 92          
BLAST of GE213454 vs. ExPASy Swiss-Prot
Match: ACYP_NITHX (Acylphosphatase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=acyP PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.294e-12
Identity = 37/74 (50.00%), Postives = 49/74 (66.22%), Query Frame = 3
Query:  231 YRNWTIENATQLGLRGWVRNRRDGSVEALFSGNPDSVKEMEQRCRHGPPDAVVTGLQVFP--SNDDPGTCPGGR 446
            +R WT+  A +LG+ GWVRNRRDGSVEALF+G  D+V +M  RCR+GP  A V  ++  P  +N +    PG R
Sbjct:   19 FRYWTMREAIRLGVAGWVRNRRDGSVEALFAGPADAVADMVARCRNGPGAARVDAVEDQPVAANAEKMIRPGER 92          
BLAST of GE213454 vs. ExPASy Swiss-Prot
Match: ACYP_RHOFD (Acylphosphatase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=acyP PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.690e-12
Identity = 34/65 (52.31%), Postives = 40/65 (61.54%), Query Frame = 3
Query:  228 FYRNWTIENATQLGLRGWVRNRRDGSVEALFSGNPDSVKEMEQRCRHGPPDAVVTGLQVFPSNDD 422
            FYR   +  A  LGLRGWVRNR DGSVEA+  G    V  M +  R GP +AVVT + +FPS  D
Sbjct:   18 FYRGSMVSRANALGLRGWVRNRLDGSVEAVVQGEATEVNRMVEWARRGPSNAVVTSVNIFPSEGD 82          
BLAST of GE213454 vs. ExPASy Swiss-Prot
Match: ACYP_BRAJA (Acylphosphatase OS=Bradyrhizobium japonicum GN=acyP PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.690e-12
Identity = 33/53 (62.26%), Postives = 37/53 (69.81%), Query Frame = 3
Query:  231 YRNWTIENATQLGLRGWVRNRRDGSVEALFSGNPDSVKEMEQRCRHGPPDAVV 389
            YR W    AT  GL GWVRNRRDGSVEALF+G P+ V +M   CRHGPP + V
Sbjct:   19 YRAWVEYQATASGLEGWVRNRRDGSVEALFAGAPNHVADMVALCRHGPPSSRV 71          
BLAST of GE213454 vs. ExPASy Swiss-Prot
Match: ACYP_NITWN (Acylphosphatase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=acyP PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.096e-11
Identity = 32/60 (53.33%), Postives = 42/60 (70.00%), Query Frame = 3
Query:  231 YRNWTIENATQLGLRGWVRNRRDGSVEALFSGNPDSVKEMEQRCRHGPPDAVVTGLQVFP 410
            +R WT+  A + G+ GWVRNRRDGSVEALF+G+ ++V EM  RCR GP  A V  ++  P
Sbjct:   19 FRYWTMREAIRFGVGGWVRNRRDGSVEALFAGSTEAVAEMITRCRSGPEFARVDDIEDQP 78          
BLAST of GE213454 vs. ExPASy Swiss-Prot
Match: ACYP_RHOPB (Acylphosphatase OS=Rhodopseudomonas palustris (strain BisB18) GN=acyP PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.275e-11
Identity = 34/64 (53.12%), Postives = 41/64 (64.06%), Query Frame = 3
Query:  231 YRNWTIENATQLGLRGWVRNRRDGSVEALFSGNPDSVKEMEQRCRHGPPDAVVTGLQVFPSNDD 422
            YR +    A +L L GWVRNRRDGSVEALF+G  ++V E+  RCR GP  A VT L   P + D
Sbjct:   19 YRAFVEYQAMKLDLEGWVRNRRDGSVEALFAGPAEAVAEIIARCRRGPSSARVTKLDEQPGSVD 82          
The following BLAST results are available for this feature:
BLAST of GE213454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
ACYP_RHORT3.406e-1355.07Acylphosphatase OS=Rhodospirillum rubrum (strain A... [more]
ACYP_SPHWW1.294e-1250.00Acylphosphatase OS=Sphingomonas wittichii (strain ... [more]
ACYP_NITHX1.294e-1250.00Acylphosphatase OS=Nitrobacter hamburgensis (strai... [more]
ACYP_RHOFD1.690e-1252.31Acylphosphatase OS=Rhodoferax ferrireducens (strai... [more]
ACYP_BRAJA1.690e-1262.26Acylphosphatase OS=Bradyrhizobium japonicum GN=acy... [more]
ACYP_NITWN1.096e-1153.33Acylphosphatase OS=Nitrobacter winogradskyi (strai... [more]
ACYP_RHOPB9.275e-1153.13Acylphosphatase OS=Rhodopseudomonas palustris (str... [more]
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Properties
Property NameValue
Genbank description334 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.