GE213448

Overview
NameGE213448
Unique NameGE213448
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13808 contig Csv1_Contig13808:30..557. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213448 vs. ExPASy Swiss-Prot
Match: CHRD1_PONAB (Cysteine and histidine-rich domain-containing protein 1 OS=Pongo abelii GN=CHORDC1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.201e-14
Identity = 29/63 (46.03%), Postives = 42/63 (66.67%), Query Frame = -3
Query:  242 ICKNKGCGKTFKEKDNHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWHDA 430
            +C N+GCG+ F  + N + AC+YHPG  VFHD ++GW CC     +F +F+ I  CTKG H++
Sbjct:    4 LCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCTKGRHNS 66          
BLAST of GE213448 vs. ExPASy Swiss-Prot
Match: CHRD1_HUMAN (Cysteine and histidine-rich domain-containing protein 1 OS=Homo sapiens GN=CHORDC1 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.201e-14
Identity = 29/63 (46.03%), Postives = 42/63 (66.67%), Query Frame = -3
Query:  242 ICKNKGCGKTFKEKDNHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWHDA 430
            +C N+GCG+ F  + N + AC+YHPG  VFHD ++GW CC     +F +F+ I  CTKG H++
Sbjct:    4 LCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCTKGRHNS 66          
BLAST of GE213448 vs. ExPASy Swiss-Prot
Match: CHRD1_CHICK (Cysteine and histidine-rich domain-containing protein 1 OS=Gallus gallus GN=CHORDC1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.201e-14
Identity = 29/63 (46.03%), Postives = 42/63 (66.67%), Query Frame = -3
Query:  242 ICKNKGCGKTFKEKDNHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWHDA 430
            +C N+GCG+ F  + N E +C+YHPG  VFHD ++GW CC     +F +F+ I  CTKG H++
Sbjct:    4 LCYNRGCGQRFDPETNTEDSCTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCTKGLHNS 66          
BLAST of GE213448 vs. ExPASy Swiss-Prot
Match: CHRD1_BOVIN (Cysteine and histidine-rich domain-containing protein 1 OS=Bos taurus GN=CHORDC1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.201e-14
Identity = 29/63 (46.03%), Postives = 42/63 (66.67%), Query Frame = -3
Query:  242 ICKNKGCGKTFKEKDNHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWHDA 430
            +C N+GCG+ F  + N + AC+YHPG  VFHD ++GW CC     +F +F+ I  CTKG H++
Sbjct:    4 LCYNRGCGQRFDPETNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCTKGRHNS 66          
BLAST of GE213448 vs. ExPASy Swiss-Prot
Match: CHRD1_MOUSE (Cysteine and histidine-rich domain-containing protein 1 OS=Mus musculus GN=Chordc1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.569e-14
Identity = 29/63 (46.03%), Postives = 42/63 (66.67%), Query Frame = -3
Query:  242 ICKNKGCGKTFKEKDNHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWHDA 430
            +C N+GCG+ F  + N + AC+YHPG  VFHD ++GW CC     +F +F+ I  CTKG H++
Sbjct:    4 LCYNRGCGQRFDPEANSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCTKGRHNS 66          
BLAST of GE213448 vs. ExPASy Swiss-Prot
Match: CHRD1_DANRE (Cysteine and histidine-rich domain-containing protein 1 OS=Danio rerio GN=chordc1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.569e-14
Identity = 30/62 (48.39%), Postives = 41/62 (66.13%), Query Frame = -3
Query:  245 ICKNKGCGKTFKEKDNHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWHD 430
            +C NKGCG+ F  + N + AC+YHPG  VFHD ++GW CC     +F +F+ I  CTKG H+
Sbjct:    4 MCYNKGCGQRFDLEKNSDDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIAGCTKGPHN 65          
BLAST of GE213448 vs. ExPASy Swiss-Prot
Match: CHRD1_XENLA (Cysteine and histidine-rich domain-containing protein 1 OS=Xenopus laevis GN=chordc1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.961e-14
Identity = 27/62 (43.55%), Postives = 41/62 (66.13%), Query Frame = -3
Query:  245 ICKNKGCGKTFKEKDNHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWHD 430
            +C N+GCG+ +  + N + +C+YHPG  VFHD ++GW CC     +F +F+ I  CTKG H+
Sbjct:    4 LCYNRGCGQRYDPEGNSDDSCTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCTKGQHN 65          

HSP 2 Score: 67.0106 bits (162), Expect = 6.169e-11
Identity = 26/60 (43.33%), Postives = 35/60 (58.33%), Query Frame = -3
Query:  248 CKNKGCGKTFKEKDNHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWH 427
            CKN GC KTF    ++E  C YH G  +FH+ M+ W CC     +F+ F+ +  CTKG H
Sbjct:  156 CKNGGCLKTFAGPQSNEEVCHYHSGVPIFHEGMKYWSCCRRKTSDFNTFLSLEGCTKGTH 215          
BLAST of GE213448 vs. ExPASy Swiss-Prot
Match: ITBP2_MOUSE (Integrin beta-1-binding protein 2 OS=Mus musculus GN=Itgb1bp2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.591e-13
Identity = 29/63 (46.03%), Postives = 37/63 (58.73%), Query Frame = -3
Query:  242 ICKNKGCGKTFKEKDNHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWHDA 430
            +C NKGCG+ F    N   +C YHPG  +FHD ++GW CC     +F EF+ I  CT G H A
Sbjct:    4 LCYNKGCGQHFDPNTNLPDSCRYHPGVPIFHDALKGWSCCRKRTVDFSEFLNIKGCTVGLHCA 66          
BLAST of GE213448 vs. ExPASy Swiss-Prot
Match: ITBP2_HUMAN (Integrin beta-1-binding protein 2 OS=Homo sapiens GN=ITGB1BP2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.124e-12
Identity = 28/63 (44.44%), Postives = 38/63 (60.32%), Query Frame = -3
Query:  242 ICKNKGCGKTFKEKDNHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWHDA 430
            +C+NKGCG+ F    N   +C +HPG  +FHD ++GW CC     +F EF+ I  CT G H A
Sbjct:    4 LCRNKGCGQHFDPNTNLPDSCCHHPGVPIFHDALKGWSCCRKRTVDFSEFLNIKGCTMGPHCA 66          
BLAST of GE213448 vs. ExPASy Swiss-Prot
Match: ITBP2_PIG (Integrin beta-1-binding protein 2 OS=Sus scrofa GN=ITGB1BP2 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.918e-12
Identity = 29/63 (46.03%), Postives = 38/63 (60.32%), Query Frame = -3
Query:  242 ICKNKGCGKTFKEKDNHETACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMGIPPCTKGWHDA 430
            +C NKGCG+ F  + N   +C +HPG  VFHD ++GW CC     +F EF+ I  CT G H A
Sbjct:    4 LCHNKGCGQHFDPQTNLPDSCCHHPGVPVFHDALKGWSCCRKRTVDFSEFLNIKGCTVGPHCA 66          
The following BLAST results are available for this feature:
BLAST of GE213448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
CHRD1_PONAB1.201e-1446.03Cysteine and histidine-rich domain-containing prot... [more]
CHRD1_HUMAN1.201e-1446.03Cysteine and histidine-rich domain-containing prot... [more]
CHRD1_CHICK1.201e-1446.03Cysteine and histidine-rich domain-containing prot... [more]
CHRD1_BOVIN1.201e-1446.03Cysteine and histidine-rich domain-containing prot... [more]
CHRD1_MOUSE1.569e-1446.03Cysteine and histidine-rich domain-containing prot... [more]
CHRD1_DANRE1.569e-1448.39Cysteine and histidine-rich domain-containing prot... [more]
CHRD1_XENLA5.961e-1443.55Cysteine and histidine-rich domain-containing prot... [more]
ITBP2_MOUSE6.591e-1346.03Integrin beta-1-binding protein 2 OS=Mus musculus ... [more]
ITBP2_HUMAN1.124e-1244.44Integrin beta-1-binding protein 2 OS=Homo sapiens ... [more]
ITBP2_PIG1.918e-1246.03Integrin beta-1-binding protein 2 OS=Sus scrofa GN... [more]
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Properties
Property NameValue
Genbank description325 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.