GE213447

Overview
NameGE213447
Unique NameGE213447
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8101 contig Csv1_Contig8101:254..929. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213447 vs. ExPASy Swiss-Prot
Match: IN21B_ORYSJ (Protein IN2-1 homolog B OS=Oryza sativa subsp. japonica GN=GSTZ5 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.678e-53
Identity = 103/170 (60.59%), Postives = 126/170 (74.12%), Query Frame = 1
Query:   13 RPGRYKEKVYPANKVPALEHNGKVIGESLDLIKYVDSNFEGPSLLPDDPEKRKIADELFSHIDTFTNDVYTSF--KGDPAKQAGPAFDYLEKALDKFDDGPFFLGQFSQVDIAYIPFVERFQIFLSEEFKYDITAGRPKLAAWIEELNKLDAYKSTKADPKQLVEFYRSR 516
            RP  YKEKVYP NKVP+LEHN +V GESLDL+KY+D+NFEGP+LLPDD EK++ A+EL ++ D F    Y+S   KGD   +A  A D +E AL KF+DGPFFLGQFS VDIAY+PF+ERFQIF S    YDIT GRP L  +IEE+NK+ AY  TK DP+ L+E  + R
Sbjct:   71 RPAWYKEKVYPENKVPSLEHNNQVKGESLDLVKYIDTNFEGPALLPDDSEKQQFAEELLAYTDAFNKASYSSIVAKGDVCDEAVAALDKIEAALSKFNDGPFFLGQFSLVDIAYVPFIERFQIFFSGIKNYDITKGRPNLQKFIEEVNKIHAYTETKQDPQFLLEHTKKR 240          
BLAST of GE213447 vs. ExPASy Swiss-Prot
Match: IN21B_ORYSI (Protein IN2-1 homolog B OS=Oryza sativa subsp. indica GN=GSTZ5 PE=1 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.678e-53
Identity = 103/170 (60.59%), Postives = 126/170 (74.12%), Query Frame = 1
Query:   13 RPGRYKEKVYPANKVPALEHNGKVIGESLDLIKYVDSNFEGPSLLPDDPEKRKIADELFSHIDTFTNDVYTSF--KGDPAKQAGPAFDYLEKALDKFDDGPFFLGQFSQVDIAYIPFVERFQIFLSEEFKYDITAGRPKLAAWIEELNKLDAYKSTKADPKQLVEFYRSR 516
            RP  YKEKVYP NKVP+LEHN +V GESLDL+KY+D+NFEGP+LLPDD EK++ A+EL ++ D F    Y+S   KGD   +A  A D +E AL KF+DGPFFLGQFS VDIAY+PF+ERFQIF S    YDIT GRP L  +IEE+NK+ AY  TK DP+ L+E  + R
Sbjct:   71 RPAWYKEKVYPENKVPSLEHNNQVKGESLDLVKYIDTNFEGPALLPDDSEKQQFAEELLAYTDAFNKASYSSIVAKGDVCDEAVAALDKIEAALSKFNDGPFFLGQFSLVDIAYVPFIERFQIFFSGIKNYDITKGRPNLQKFIEEVNKIHAYTETKQDPQFLLEHTKKR 240          
BLAST of GE213447 vs. ExPASy Swiss-Prot
Match: IN21A_ORYSJ (Protein IN2-1 homolog A OS=Oryza sativa subsp. japonica GN=Os03g0283200 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.244e-48
Identity = 93/169 (55.03%), Postives = 123/169 (72.78%), Query Frame = 1
Query:   13 RPGRYKEKVYPANKVPALEHNGKVIGESLDLIKYVDSNFEGPSLLPDDPEKRKIADELFSHIDTFTNDVYTSF--KGDPAKQAGPAFDYLEKALDKFDDGPFFLGQFSQVDIAYIPFVERFQIFLSEEFKYDITAGRPKLAAWIEELNKLDAYKSTKADPKQLVEFYRS 513
            +P  YKEKVY    VP+LEHNGK++GESLDLIKY+DS+FEGP+LLP+DPEKR+ ADEL ++ + FT  +Y+    K D + +   A D +E AL KF DGPFFLGQFS VDIAY+  +ER QI+ S   KY+IT GRP L  +IEE+N+++AY  TK DP  L++  ++
Sbjct:   70 KPAWYKEKVYEQGTVPSLEHNGKIMGESLDLIKYIDSHFEGPALLPEDPEKRQFADELIAYANAFTKALYSPLISKADLSAETVAALDKIEAALSKFGDGPFFLGQFSLVDIAYVTIIERIQIYYSHIRKYEITNGRPNLEKFIEEINRIEAYTQTKNDPLYLLDLAKT 238          
BLAST of GE213447 vs. ExPASy Swiss-Prot
Match: IN21_MAIZE (Protein IN2-1 OS=Zea mays GN=IN2-1 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.020e-42
Identity = 86/169 (50.89%), Postives = 114/169 (67.46%), Query Frame = 1
Query:   13 RPGRYKEKVYPANKVPALEHNGKVIGESLDLIKYVDSNFEGPSLLPDDPEKRKIADELFSHIDTFTNDVYTSFKGDPA--KQAGPAFDYLEKALDKFDDGPFFLGQFSQVDIAYIPFVERFQIFLSEEFKYDITAGRPKLAAWIEELNKLDAYKSTKADPKQLVEFYRS 513
            +P  YK+KVY    VP+LEH+ +V GESLDLI+Y+DSNF+GP+LLP+D  KR+ ADELF+  + FT  +Y+      A   +   A D LE  L KFDDGPFFLGQFS  D+AY+  +ER QI+ S    YDI  GRP L  +I+E+NK++AY  TK DP  L++  +S
Sbjct:   70 KPAWYKDKVYAQGTVPSLEHDSEVRGESLDLIRYIDSNFDGPALLPEDAAKRQFADELFASANAFTKALYSPLLSHAAVSDEVVAALDKLEADLSKFDDGPFFLGQFSLADVAYVTILERVQIYYSHLRNYDIAQGRPNLQEFIDEMNKIEAYAQTKNDPLFLLDLAKS 238          
BLAST of GE213447 vs. ExPASy Swiss-Prot
Match: GSTX3_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.709e-11
Identity = 54/175 (30.86%), Postives = 83/175 (47.43%), Query Frame = 1
Query:   52 KVPALEHNGKVIGESLDLIKYVDSNFEGPSLLPDDPEKRKIA--------DELFSHIDTFTNDVYTSFKGDPAKQAGPAFDYLEKALD-KFDDGPFFLG-QFSQVDIA-------YIPFVERFQIFLSEEFKYDITAGRPKLAAWIEELNKLDAYKSTKADPKQLVEFYRSRFVA 525
            KVP L HNGK I ES+ +++Y+D  FEGPS+LP DP  R +A        D++ + ++TF        KG+  ++       + K LD +  D  FF+G +F   DIA          F E + + L    K+      P  + W +E       K +     +L+ F+R+RF A
Sbjct:   52 KVPVLIHNGKPIVESMVILEYIDETFEGPSILPKDPYDRALARFWSKFLGDKVAAVVNTFFR------KGEEQEKGKEEVYEMLKVLDNELKDKKFFVGDKFGFADIAANLVGFWLGVFEEGYGVVLVTSEKF------PNFSRWRDEYINCSQVKESLPSRDELLAFFRARFQA 214          
BLAST of GE213447 vs. ExPASy Swiss-Prot
Match: GSTX2_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.539e-11
Identity = 53/165 (32.12%), Postives = 79/165 (47.88%), Query Frame = 1
Query:   52 KVPALEHNGKVIGESLDLIKYVDSNFEGPSLLPDDPEKRKIADELFSHIDTFTNDVYTSF--KGDPAKQAGPAFDYLEKALD-KFDDGPFFLG-QFSQVDIAYIPFVERFQIFLSEEFKYDITAGR---PKLAAWIEELNKLDAYKSTKADPKQLVEFYRSRFVA 525
            KVP L HNGK I ES+ +++Y+D  FEGPS+LP DP  R +A      +D     V  +F  KG+  ++       + K LD +  D  FF G +F   DIA    +  F + + EE   D+       P  + W +E         +     +L+ F+R+RF A
Sbjct:   52 KVPVLIHNGKPIVESMIILEYIDETFEGPSILPKDPYDRALARFWAKFLDDKVAAVVNTFFRKGEEQEKGKEEVYEMLKVLDNELKDKKFFAGDKFGFADIA--ANLVGFWLGVFEEGYGDVLVKSEKFPNFSKWRDEYINCSQVNESLPPRDELLAFFRARFQA 214          
BLAST of GE213447 vs. ExPASy Swiss-Prot
Match: GSTX1_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.883e-11
Identity = 52/160 (32.50%), Postives = 75/160 (46.88%), Query Frame = 1
Query:   52 KVPALEHNGKVIGESLDLIKYVDSNFEGPSLLPDDPEKRKIADELFSHIDTFTNDVYTSF--KGDPAKQAGPAFDYLEKALD-KFDDGPFFLG-QFSQVDIAYIPFVERFQIFLSEEFKYDITAGR-PKLAAWIEELNKLDAYKSTKADPKQLVEFYRSR 516
            KVP L HNGK I ES+ +++Y+D  FEGPS+LP DP  R +A      +D     V  +F  KG+  ++       + K LD +  D  FF+G +F   DIA         +F        +T+ + P    W  E       K +     +L+ FYRSR
Sbjct:   52 KVPVLIHNGKRIVESMVILEYIDETFEGPSILPKDPYDRALARFWAKFLDDKVPAVVKTFLRKGEEQEKDKEEVCEMLKVLDNELKDKKFFVGDKFGFADIAANLVAFWLGVFEEASGVVLVTSEKFPNFCKWRGEYINCSQIKESLPPRDELLAFYRSR 211          
The following BLAST results are available for this feature:
BLAST of GE213447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
IN21B_ORYSJ1.678e-5360.59Protein IN2-1 homolog B OS=Oryza sativa subsp. jap... [more]
IN21B_ORYSI1.678e-5360.59Protein IN2-1 homolog B OS=Oryza sativa subsp. ind... [more]
IN21A_ORYSJ1.244e-4855.03Protein IN2-1 homolog A OS=Oryza sativa subsp. jap... [more]
IN21_MAIZE1.020e-4250.89Protein IN2-1 OS=Zea mays GN=IN2-1 PE=2 SV=1[more]
GSTX3_TOBAC2.709e-1130.86Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTX2_TOBAC3.539e-1132.12Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTX1_TOBAC7.883e-1132.50Probable glutathione S-transferase OS=Nicotiana ta... [more]
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Properties
Property NameValue
Genbank description324 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.