GE213445

Overview
NameGE213445
Unique NameGE213445
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13717 contig Csv1_Contig13717:1..239. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of GE213445 vs. ExPASy Swiss-Prot
Match: U139_ARATH (UPF0139 membrane protein At5g07960 OS=Arabidopsis thaliana GN=At5g07960 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.726e-15
Identity = 39/51 (76.47%), Postives = 43/51 (84.31%), Query Frame = -3 
Query:   22 SHNNS---NDPRQPSAAKPYVSTAVAPEDLPVDYSGFIAVIFGLAGVMFRY 165
            SH N+   NDPRQPSAAKPY+   VAPEDLPVDYSGFIAVI G++GVMFRY
Sbjct:    4 SHGNASSVNDPRQPSAAKPYIPRPVAPEDLPVDYSGFIAVILGVSGVMFRY 54
The following BLAST results are available for this feature:
BLAST of GE213445 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
U139_ARATH1.726e-1576.47UPF0139 membrane protein At5g07960 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank description322 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.