GE213442

Overview
NameGE213442
Unique NameGE213442
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3481 contig Csv1_Contig3481:114..310. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213442 vs. ExPASy Swiss-Prot
Match: PAP_CITUN (Plastid-lipid-associated protein, chloroplastic OS=Citrus unshiu GN=PAP PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.057e-21
Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 2
Query:   23 YTSFLGLFPLLSRGTLPLARVEEISQTIDSENFTVQNSIRFAGPLATTSIST 178
            YTSF GLFPLLSRGTLPLARVEEISQTIDSENFTVQNSI+FAGPLATTSIST
Sbjct:  155 YTSFSGLFPLLSRGTLPLARVEEISQTIDSENFTVQNSIQFAGPLATTSIST 206          
BLAST of GE213442 vs. ExPASy Swiss-Prot
Match: LIPC_SOLTU (Light-induced protein, chloroplastic OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.286e-18
Identity = 46/52 (88.46%), Postives = 48/52 (92.31%), Query Frame = 2
Query:   23 YTSFLGLFPLLSRGTLPLARVEEISQTIDSENFTVQNSIRFAGPLATTSIST 178
            YTSF GLFPLLSRG LPL RVEEISQTIDSE+FTVQNS+ FAGPLATTSIST
Sbjct:  158 YTSFSGLFPLLSRGNLPLVRVEEISQTIDSESFTVQNSVVFAGPLATTSIST 209          
BLAST of GE213442 vs. ExPASy Swiss-Prot
Match: LIPC_SOLDE (Light-induced protein, chloroplastic OS=Solanum demissum PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.286e-18
Identity = 46/52 (88.46%), Postives = 48/52 (92.31%), Query Frame = 2
Query:   23 YTSFLGLFPLLSRGTLPLARVEEISQTIDSENFTVQNSIRFAGPLATTSIST 178
            YTSF GLFPLLSRG LPL RVEEISQTIDSE+FTVQNS+ FAGPLATTSIST
Sbjct:  158 YTSFSGLFPLLSRGNLPLVRVEEISQTIDSESFTVQNSVVFAGPLATTSIST 209          
BLAST of GE213442 vs. ExPASy Swiss-Prot
Match: PAP2_BRACM (Plastid lipid-associated protein 2, chloroplastic OS=Brassica campestris GN=PAP2 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.337e-18
Identity = 42/52 (80.77%), Postives = 49/52 (94.23%), Query Frame = 2
Query:   23 YTSFLGLFPLLSRGTLPLARVEEISQTIDSENFTVQNSIRFAGPLATTSIST 178
            YTSF+GLFPLLSRG +PL +V+EISQTIDS+NFTV+NS+ FAGPLATTSIST
Sbjct:  151 YTSFVGLFPLLSRGIVPLVKVDEISQTIDSDNFTVENSVLFAGPLATTSIST 202          
BLAST of GE213442 vs. ExPASy Swiss-Prot
Match: PAP2_ARATH (Probable plastid-lipid-associated protein 2, chloroplastic OS=Arabidopsis thaliana GN=PAP2 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.138e-17
Identity = 41/52 (78.85%), Postives = 47/52 (90.38%), Query Frame = 2
Query:   23 YTSFLGLFPLLSRGTLPLARVEEISQTIDSENFTVQNSIRFAGPLATTSIST 178
            YTSF+ LFPLLSRG +PL +V+EISQTIDS+NFTVQNS+RFAGPL T SIST
Sbjct:  142 YTSFVNLFPLLSRGIVPLIKVDEISQTIDSDNFTVQNSVRFAGPLGTNSIST 193          
BLAST of GE213442 vs. ExPASy Swiss-Prot
Match: PAP1_ARATH (Probable plastid-lipid-associated protein 1, chloroplastic OS=Arabidopsis thaliana GN=PAP1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.019e-15
Identity = 39/52 (75.00%), Postives = 46/52 (88.46%), Query Frame = 2
Query:   23 YTSFLGLFPLLSRGTLPLARVEEISQTIDSENFTVQNSIRFAGPLATTSIST 178
            YTSF+GLFPLLSR   PL +V+EISQTIDS++FTVQNS+RFAGP +TTS ST
Sbjct:  150 YTSFVGLFPLLSRRIEPLVKVDEISQTIDSDSFTVQNSVRFAGPFSTTSFST 201          
BLAST of GE213442 vs. ExPASy Swiss-Prot
Match: PAP1_BRACM (Plastid lipid-associated protein 1, chloroplastic OS=Brassica campestris GN=PAP1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.331e-15
Identity = 39/52 (75.00%), Postives = 46/52 (88.46%), Query Frame = 2
Query:   23 YTSFLGLFPLLSRGTLPLARVEEISQTIDSENFTVQNSIRFAGPLATTSIST 178
            YTSF+GLFPLLSR   PL +V+EISQTIDS++FTV NS+RFA PLATTS+ST
Sbjct:  159 YTSFVGLFPLLSRRISPLVKVDEISQTIDSDSFTVHNSVRFASPLATTSLST 210          
BLAST of GE213442 vs. ExPASy Swiss-Prot
Match: CHRC_CUCSA (Chromoplast-specific carotenoid-associated protein, chromoplast OS=Cucumis sativus GN=CHRC PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.331e-15
Identity = 41/52 (78.85%), Postives = 47/52 (90.38%), Query Frame = 2
Query:   23 YTSFLGLFPLLSRGTLPLARVEEISQTIDSENFTVQNSIRFAGPLATTSIST 178
            YT+F GLFPLLSR  LPL +VEEISQTIDSEN TVQNS++F+GPLATTSI+T
Sbjct:  155 YTTFAGLFPLLSRN-LPLVKVEEISQTIDSENLTVQNSVQFSGPLATTSITT 205          
BLAST of GE213442 vs. ExPASy Swiss-Prot
Match: PAP2_ORYSJ (Probable plastid-lipid-associated protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PAP2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.873e-15
Identity = 41/53 (77.36%), Postives = 46/53 (86.79%), Query Frame = 2
Query:   23 YTSFLGLFPLLSRGTLP-LARVEEISQTIDSENFTVQNSIRFAGPLATTSIST 178
            YTSF  LFPLL  G+LP L +VEEISQTIDSENFTVQN I+F+GPLATTS+ST
Sbjct:  151 YTSFSQLFPLLGSGSLPQLVKVEEISQTIDSENFTVQNCIKFSGPLATTSVST 203          
The following BLAST results are available for this feature:
BLAST of GE213442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PAP_CITUN8.057e-2196.15Plastid-lipid-associated protein, chloroplastic OS... [more]
LIPC_SOLTU1.286e-1888.46Light-induced protein, chloroplastic OS=Solanum tu... [more]
LIPC_SOLDE1.286e-1888.46Light-induced protein, chloroplastic OS=Solanum de... [more]
PAP2_BRACM8.337e-1880.77Plastid lipid-associated protein 2, chloroplastic ... [more]
PAP2_ARATH4.138e-1778.85Probable plastid-lipid-associated protein 2, chlor... [more]
PAP1_ARATH1.019e-1575.00Probable plastid-lipid-associated protein 1, chlor... [more]
PAP1_BRACM1.331e-1575.00Plastid lipid-associated protein 1, chloroplastic ... [more]
CHRC_CUCSA1.331e-1578.85Chromoplast-specific carotenoid-associated protein... [more]
PAP2_ORYSJ3.873e-1577.36Probable plastid-lipid-associated protein 2, chlor... [more]
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Properties
Property NameValue
Genbank description319 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.