GE213439

Overview
NameGE213439
Unique NameGE213439
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11134 contig Csv1_Contig11134:1147..1378. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213439 vs. ExPASy Swiss-Prot
Match: TBB6_ARATH (Tubulin beta-6 chain OS=Arabidopsis thaliana GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.421e-33
Identity = 65/71 (91.55%), Postives = 66/71 (92.96%), Query Frame = -3
Query:   15 SGRPGRYGQIFRPDNFVFGQSGAANNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTSA 227
            S R G YGQIFRPDNFVFGQSGA NNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGT +
Sbjct:   75 SVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGS 145          
BLAST of GE213439 vs. ExPASy Swiss-Prot
Match: TBB3_GOSHI (Tubulin beta-3 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.421e-33
Identity = 65/71 (91.55%), Postives = 66/71 (92.96%), Query Frame = -3
Query:   15 SGRPGRYGQIFRPDNFVFGQSGAANNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTSA 227
            S R G YGQIFRPDNFVFGQSGA NNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGT +
Sbjct:   75 SVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGS 145          
BLAST of GE213439 vs. ExPASy Swiss-Prot
Match: TBB1_ARATH (Tubulin beta-1 chain OS=Arabidopsis thaliana GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.162e-33
Identity = 64/69 (92.75%), Postives = 65/69 (94.20%), Query Frame = -3
Query:   15 RPGRYGQIFRPDNFVFGQSGAANNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTSA 221
            R G YGQIFRPDNFVFGQSGA NNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGT +
Sbjct:   78 RSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGS 146          
BLAST of GE213439 vs. ExPASy Swiss-Prot
Match: TBB_HORVU (Tubulin beta chain OS=Hordeum vulgare GN=TUBB PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.394e-33
Identity = 64/71 (90.14%), Postives = 66/71 (92.96%), Query Frame = -3
Query:   15 SGRPGRYGQIFRPDNFVFGQSGAANNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTSA 227
            S R G YGQIFRPDNFVFGQSGA NNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCHSLGGGT +
Sbjct:   75 SVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGS 145          
BLAST of GE213439 vs. ExPASy Swiss-Prot
Match: TBB9_GOSHI (Tubulin beta-9 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.394e-33
Identity = 64/71 (90.14%), Postives = 66/71 (92.96%), Query Frame = -3
Query:   15 SGRPGRYGQIFRPDNFVFGQSGAANNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTSA 227
            S R G YGQIFRPDNFVFGQSGA NNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCHSLGGGT +
Sbjct:   75 SVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGS 145          
BLAST of GE213439 vs. ExPASy Swiss-Prot
Match: TBB8_MAIZE (Tubulin beta-8 chain OS=Zea mays GN=TUBB8 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.394e-33
Identity = 64/71 (90.14%), Postives = 66/71 (92.96%), Query Frame = -3
Query:   15 SGRPGRYGQIFRPDNFVFGQSGAANNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTSA 227
            S R G YGQIFRPDNFVFGQSGA NNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCHSLGGGT +
Sbjct:   75 SVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGS 145          
BLAST of GE213439 vs. ExPASy Swiss-Prot
Match: TBB8_ARATH (Tubulin beta-8 chain OS=Arabidopsis thaliana GN=TUBB8 PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 5.394e-33
Identity = 64/71 (90.14%), Postives = 66/71 (92.96%), Query Frame = -3
Query:   15 SGRPGRYGQIFRPDNFVFGQSGAANNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTSA 227
            S R G YGQIFRPDNFVFGQSGA NNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCHSLGGGT +
Sbjct:   75 SVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGS 145          
BLAST of GE213439 vs. ExPASy Swiss-Prot
Match: TBB7_ARATH (Tubulin beta-7 chain OS=Arabidopsis thaliana GN=TUBB7 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.394e-33
Identity = 64/71 (90.14%), Postives = 66/71 (92.96%), Query Frame = -3
Query:   15 SGRPGRYGQIFRPDNFVFGQSGAANNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTSA 227
            S R G YGQIFRPDNFVFGQSGA NNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCHSLGGGT +
Sbjct:   75 SVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGS 145          
BLAST of GE213439 vs. ExPASy Swiss-Prot
Match: TBB6_ORYSJ (Tubulin beta-6 chain OS=Oryza sativa subsp. japonica GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.394e-33
Identity = 64/71 (90.14%), Postives = 66/71 (92.96%), Query Frame = -3
Query:   15 SGRPGRYGQIFRPDNFVFGQSGAANNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTSA 227
            S R G YGQIFRPDNFVFGQSGA NNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCHSLGGGT +
Sbjct:   75 SVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGS 145          
BLAST of GE213439 vs. ExPASy Swiss-Prot
Match: TBB6_MAIZE (Tubulin beta-6 chain OS=Zea mays GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.394e-33
Identity = 64/71 (90.14%), Postives = 66/71 (92.96%), Query Frame = -3
Query:   15 SGRPGRYGQIFRPDNFVFGQSGAANNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTSA 227
            S R G YGQIFRPDNFVFGQSGA NNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCHSLGGGT +
Sbjct:   75 SVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGS 145          
The following BLAST results are available for this feature:
BLAST of GE213439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 366
Match NameE-valueIdentityDescription
TBB6_ARATH2.421e-3391.55Tubulin beta-6 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB3_GOSHI2.421e-3391.55Tubulin beta-3 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB1_ARATH3.162e-3392.75Tubulin beta-1 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB_HORVU5.394e-3390.14Tubulin beta chain OS=Hordeum vulgare GN=TUBB PE=2... [more]
TBB9_GOSHI5.394e-3390.14Tubulin beta-9 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB8_MAIZE5.394e-3390.14Tubulin beta-8 chain OS=Zea mays GN=TUBB8 PE=2 SV=... [more]
TBB8_ARATH5.394e-3390.14Tubulin beta-8 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB7_ARATH5.394e-3390.14Tubulin beta-7 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB6_ORYSJ5.394e-3390.14Tubulin beta-6 chain OS=Oryza sativa subsp. japoni... [more]
TBB6_MAIZE5.394e-3390.14Tubulin beta-6 chain OS=Zea mays GN=TUBB6 PE=2 SV=... [more]

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Properties
Property NameValue
Genbank description315 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.