GE213438

Overview
NameGE213438
Unique NameGE213438
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2303 contig Csv1_Contig2303:74..933. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213438 vs. ExPASy Swiss-Prot
Match: LPAT2_ARATH (1-acyl-sn-glycerol-3-phosphate acyltransferase 2 OS=Arabidopsis thaliana GN=LPAT2 PE=1 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 3.269e-69
Identity = 127/180 (70.56%), Postives = 149/180 (82.78%), Query Frame = 2
Query:   26 TKGFVSAVSHMRSFVPAIYDVTVAIPKSSPAPTMIRLFKGQSSVMHVHLKRHLMKELPETDDAVAQWCRDTFVAKDALLDKHNAEDTFSDQELQEIPRPKKSLLVVISWASLVIFGVLKFLQWSSLLSSWKGIAFSAFGLGIVTVLMQILIRFSQSERSTPAKVVPSKPKNSKEPEQTTQ 565
            TK FVSAVS+MRSFVPAIYD+TV IPK+SP PTM+RLFKGQ SV+HVH+K H MK+LPE+DDA+AQWCRD FVAKDALLDKH A DTF  Q+ Q I RP KSL VV+SWA ++  G +KFL W+ L SSWKGI  SA GLGI+T+ MQILIR SQSERSTPAKVVP+KPK++  PE ++Q
Sbjct:  203 TKSFVSAVSNMRSFVPAIYDMTVTIPKTSPPPTMLRLFKGQPSVVHVHIKCHSMKDLPESDDAIAQWCRDQFVAKDALLDKHIAADTFPGQQEQNIGRPIKSLAVVLSWACVLTLGAIKFLHWAQLFSSWKGITISALGLGIITLCMQILIRSSQSERSTPAKVVPAKPKDNHHPESSSQ 382          
BLAST of GE213438 vs. ExPASy Swiss-Prot
Match: LPAT2_BRANA (1-acyl-sn-glycerol-3-phosphate acyltransferase 2 OS=Brassica napus GN=LPAT2 PE=2 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 5.575e-69
Identity = 128/180 (71.11%), Postives = 150/180 (83.33%), Query Frame = 2
Query:   26 TKGFVSAVSHMRSFVPAIYDVTVAIPKSSPAPTMIRLFKGQSSVMHVHLKRHLMKELPETDDAVAQWCRDTFVAKDALLDKHNAEDTFSDQELQEIPRPKKSLLVVISWASLVIFGVLKFLQWSSLLSSWKGIAFSAFGLGIVTVLMQILIRFSQSERSTPAKVVPSKPKNSKEPEQTTQ 565
            TKGFVSAVS+MRSFVPAIYD+TVAIPK+SP PTM+RLFKGQ SV+HVH+K H MK+LPE +D +AQWCRD FVAKDALLDKH A DTF  Q+ Q I RP KSL VV+SWA L+  G +KFL WS+L SSWKGIA SAFGLGI+T+ MQILIR SQSERSTPAKV P+KPK++ +   ++Q
Sbjct:  203 TKGFVSAVSNMRSFVPAIYDMTVAIPKTSPPPTMLRLFKGQPSVVHVHIKCHSMKDLPEPEDEIAQWCRDQFVAKDALLDKHIAADTFPGQKEQNIGRPIKSLAVVVSWACLLTLGAMKFLHWSNLFSSWKGIALSAFGLGIITLCMQILIRSSQSERSTPAKVAPAKPKDNHQSGPSSQ 382          
BLAST of GE213438 vs. ExPASy Swiss-Prot
Match: LPAT2_BRAOL (1-acyl-sn-glycerol-3-phosphate acyltransferase 2 OS=Brassica oleracea GN=LPAT2 PE=2 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 3.996e-67
Identity = 126/180 (70.00%), Postives = 148/180 (82.22%), Query Frame = 2
Query:   26 TKGFVSAVSHMRSFVPAIYDVTVAIPKSSPAPTMIRLFKGQSSVMHVHLKRHLMKELPETDDAVAQWCRDTFVAKDALLDKHNAEDTFSDQELQEIPRPKKSLLVVISWASLVIFGVLKFLQWSSLLSSWKGIAFSAFGLGIVTVLMQILIRFSQSERSTPAKVVPSKPKNSKEPEQTTQ 565
            TKGFVSAVS+MRSFVPAIYD+TVAIPK+SP PTM+RLFKGQ SV+HVH+K H MK+LPE++D +AQWCRD FVAKDALLDKH A DTF  Q+ Q I RP KSL VV+SWA L+  G +KFL WS+L SS KGIA SA GLGI+T+ MQILIR SQSERSTPAKV P+KPK+  +   ++Q
Sbjct:  204 TKGFVSAVSNMRSFVPAIYDMTVAIPKTSPPPTMLRLFKGQPSVVHVHIKCHSMKDLPESEDEIAQWCRDQFVAKDALLDKHIAADTFPGQKEQNIDRPIKSLAVVVSWACLLTLGAMKFLHWSNLFSSLKGIALSALGLGIITLCMQILIRSSQSERSTPAKVAPAKPKDKHQSGSSSQ 383          
BLAST of GE213438 vs. ExPASy Swiss-Prot
Match: LPAT_MAIZE (1-acyl-sn-glycerol-3-phosphate acyltransferase PLS1 OS=Zea mays GN=PLS1 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 6.617e-54
Identity = 98/170 (57.65%), Postives = 134/170 (78.82%), Query Frame = 2
Query:   26 TKGFVSAVSHMRSFVPAIYDVTVAIPKSSPAPTMIRLFKGQSSVMHVHLKRHLMKELPETDDAVAQWCRDTFVAKDALLDKHNAEDTFSDQELQEIPRPKKSLLVVISWASLVIFGVLKFLQWSSLLSSWKGIAFSAFGLGIVTVLMQILIRFSQSERSTPAKVVPSKPK 535
            TKGFVSAVS MR FVPAIYD TV +PK SP PTM+R+ KGQSSV+HV +KRH M E+P++D+ V++WC+D FVAKDALLDKH A  TF D+E++ I RP KSLLV + W+ L++FG ++F +W+ LLS+W+G+AF+A G+ +VT +M + I FSQ+ERS+ A+   ++ K
Sbjct:  204 TKGFVSAVSIMRDFVPAIYDTTVIVPKDSPQPTMLRILKGQSSVIHVRMKRHAMSEMPKSDEDVSKWCKDIFVAKDALLDKHLATGTF-DEEIRPIGRPVKSLLVTLFWSCLLLFGAIEFFKWTQLLSTWRGVAFTAAGMALVTGVMHVFIMFSQAERSSSARAARNRVK 372          
BLAST of GE213438 vs. ExPASy Swiss-Prot
Match: LPAT3_ARATH (1-acyl-sn-glycerol-3-phosphate acyltransferase 3 OS=Arabidopsis thaliana GN=LPAT3 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.428e-48
Identity = 91/163 (55.83%), Postives = 121/163 (74.23%), Query Frame = 2
Query:   26 TKGFVSAVSHMRSFVPAIYDVTVAIPKSSPAPTMIRLFKGQSSVMHVHLKRHLMKELPETDDAVAQWCRDTFVAKDALLDKHNAEDTFSDQELQEIPRPKKSLLVVISWASLVIFGVLKFLQWSSLLSSWKGIAFSAFGLGIVTVLMQILIRFSQSERSTPAK 514
            TKGFVSAVS +RSFVPAIYD T+ +  + P PT++R+F GQSS +++ ++RH M ELPETDD +AQWC+D F+ KDA L+K+  +D FSD E+ +I RP K L+VVI W   ++FG  K LQW S+++SWK I    F L I T+ MQILI+ S+S+RSTPAK
Sbjct:  204 TKGFVSAVSEIRSFVPAIYDCTLTVHNNQPTPTLLRMFSGQSSEINLQMRRHKMSELPETDDGIAQWCQDLFITKDAQLEKYFTKDVFSDLEVHQINRPIKPLIVVIIWLGFLVFGGFKLLQWLSIVASWKIILLFVFFLVIATITMQILIQSSESQRSTPAK 366          
BLAST of GE213438 vs. ExPASy Swiss-Prot
Match: PLCD_BOVIN (1-acyl-sn-glycerol-3-phosphate acyltransferase delta OS=Bos taurus GN=AGPAT4 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.047e-11
Identity = 43/174 (24.71%), Postives = 93/174 (53.45%), Query Frame = 2
Query:   26 TKGFVSAVSHMRSFVPAIYDVTVAIPKSSPAPTMIRLFKGQSSVMHVHLKRHLMKELPETDDAVAQWCRDTFVAKDALLDKHNAEDTFSDQELQEIPRPKKSLLVVISWASLVIFGVLKFLQWSSLLSSWKGIAFSAFGLGIVTVLMQI--LIRFSQSERSTPAKVVPSKPKNS 541
            TKGF   V  +R+ V A+YD T+   +++  PT++ +  G+     ++++R  ++E+PE +D  A W    +  KDA  ++++   TF +  +   PR   +L+  + WAS++++   +F+   +++SS   +  ++F L      M +  +I  ++ ++ +    + SK K+S
Sbjct:  208 TKGFAVTVRSLRNVVSAVYDCTLNF-RNNENPTLLGVLNGKKYHADLYVRRIPLEEVPEEEDKCAAWLHKLYQEKDAFQEEYSRTGTFPETPVVP-PRRPWTLVNWLFWASMLLYPFFRFV--INMVSSGSSLTLASFVLVFFVASMGVRWMIGVTEIDKGSAYGNMDSKQKHS 377          
The following BLAST results are available for this feature:
BLAST of GE213438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
LPAT2_ARATH3.269e-6970.561-acyl-sn-glycerol-3-phosphate acyltransferase 2 O... [more]
LPAT2_BRANA5.575e-6971.111-acyl-sn-glycerol-3-phosphate acyltransferase 2 O... [more]
LPAT2_BRAOL3.996e-6770.001-acyl-sn-glycerol-3-phosphate acyltransferase 2 O... [more]
LPAT_MAIZE6.617e-5457.651-acyl-sn-glycerol-3-phosphate acyltransferase PLS... [more]
LPAT3_ARATH1.428e-4855.831-acyl-sn-glycerol-3-phosphate acyltransferase 3 O... [more]
PLCD_BOVIN9.047e-1124.711-acyl-sn-glycerol-3-phosphate acyltransferase del... [more]
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Properties
Property NameValue
Genbank description314 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.