GE213436

Overview
NameGE213436
Unique NameGE213436
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1104 contig Csv1_Contig1104:145..495. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213436 vs. ExPASy Swiss-Prot
Match: IF6_ARATH (Eukaryotic translation initiation factor 6 OS=Arabidopsis thaliana GN=At2g39820 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.517e-24
Identity = 52/68 (76.47%), Postives = 61/68 (89.71%), Query Frame = 3
Query:   21 QVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDSYV 224
            QVPLVAGTVNRGS+VI AGLTVNDWTAFCGSDTTA ELSV+ ++FKL ++QP+ +  EMRKSLID+YV
Sbjct:  180 QVPLVAGTVNRGSQVISAGLTVNDWTAFCGSDTTAVELSVVNNIFKLVQSQPDFVGSEMRKSLIDTYV 247          
BLAST of GE213436 vs. ExPASy Swiss-Prot
Match: IF6_HUMAN (Eukaryotic translation initiation factor 6 OS=Homo sapiens GN=EIF6 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.079e-23
Identity = 52/66 (78.79%), Postives = 56/66 (84.85%), Query Frame = 3
Query:   21 QVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDS 218
            QVPLVAGTVNRGSEVI AG+ VNDW AFCG DTT+TELSV+ESVFKL EAQP+ I   MR SLIDS
Sbjct:  178 QVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSLIDS 243          
BLAST of GE213436 vs. ExPASy Swiss-Prot
Match: IF6_BOVIN (Eukaryotic translation initiation factor 6 OS=Bos taurus GN=EIF6 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 5.079e-23
Identity = 52/66 (78.79%), Postives = 56/66 (84.85%), Query Frame = 3
Query:   21 QVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDS 218
            QVPLVAGTVNRGSEVI AG+ VNDW AFCG DTT+TELSV+ESVFKL EAQP+ I   MR SLIDS
Sbjct:  178 QVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSLIDS 243          
BLAST of GE213436 vs. ExPASy Swiss-Prot
Match: IF6_MOUSE (Eukaryotic translation initiation factor 6 OS=Mus musculus GN=Eif6 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 1.478e-22
Identity = 51/66 (77.27%), Postives = 56/66 (84.85%), Query Frame = 3
Query:   21 QVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDS 218
            QVPLVAGTVNRGSEVI AG+ VNDW AFCG DTT+TELSV+ESVFKL EA+P+ I   MR SLIDS
Sbjct:  178 QVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAKPSTIATSMRDSLIDS 243          
BLAST of GE213436 vs. ExPASy Swiss-Prot
Match: IF6_SCHPO (Eukaryotic translation initiation factor 6 OS=Schizosaccharomyces pombe GN=tif6 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.806e-20
Identity = 47/67 (70.15%), Postives = 58/67 (86.57%), Query Frame = 3
Query:   21 QVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDSY 221
            QVPLVAGT+NRGS+VIGAGL VNDW AF G DTTATEL+V ES+FKL++AQP+AI+   R +L++SY
Sbjct:  178 QVPLVAGTINRGSDVIGAGLVVNDWCAFAGLDTTATELAVCESIFKLQDAQPSAIISN-RDTLVESY 243          
BLAST of GE213436 vs. ExPASy Swiss-Prot
Match: IF6_DROME (Probable eukaryotic translation initiation factor 6 OS=Drosophila melanogaster GN=eIF6 PE=2 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 9.912e-19
Identity = 43/65 (66.15%), Postives = 54/65 (83.08%), Query Frame = 3
Query:   21 QVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLID 215
            QVPLVAGTVNRGSEV+ AG+ VNDW +F G +TTATE+SVIESVFKL +AQP  +  ++R +LI+
Sbjct:  178 QVPLVAGTVNRGSEVLAAGMVVNDWLSFVGMNTTATEISVIESVFKLNQAQPATVTTKLRAALIE 242          
BLAST of GE213436 vs. ExPASy Swiss-Prot
Match: IF6_YEAST (Eukaryotic translation initiation factor 6 OS=Saccharomyces cerevisiae GN=TIF6 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.766e-18
Identity = 43/67 (64.18%), Postives = 55/67 (82.09%), Query Frame = 3
Query:   21 QVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDSY 221
            QVPLVAGTVNRGS V+GAG+ VND+ A  G DTTA ELSVIES+F+L++AQP +I   +R +LI++Y
Sbjct:  178 QVPLVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRLQDAQPESISGNLRDTLIETY 244          
BLAST of GE213436 vs. ExPASy Swiss-Prot
Match: IF6_CAEEL (Eukaryotic translation initiation factor 6 OS=Caenorhabditis elegans GN=eif-6 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.766e-18
Identity = 42/67 (62.69%), Postives = 56/67 (83.58%), Query Frame = 3
Query:   21 QVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLRE-AQPNAIVDEMRKSLIDS 218
            Q+P+VAGT NRGSE+IGAG+ VNDW AFCG D+T+TELSV+ES+FKL E   P +I +++R +LI+S
Sbjct:  178 QIPVVAGTCNRGSELIGAGMVVNDWVAFCGLDSTSTELSVVESIFKLGEQGAPTSISNQLRDTLIES 244          
BLAST of GE213436 vs. ExPASy Swiss-Prot
Match: IF6_DICDI (Probable eukaryotic translation initiation factor 6 OS=Dictyostelium discoideum GN=eif6 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.919e-18
Identity = 40/66 (60.61%), Postives = 55/66 (83.33%), Query Frame = 3
Query:   21 QVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDS 218
            QVPLVAGTVNRG+E + AG  VNDWTA  G+DTTATE+SVIES+F L+ ++P+ I++ +R S++D+
Sbjct:  178 QVPLVAGTVNRGNECVAAGCVVNDWTAIVGADTTATEISVIESIFALQGSKPSNIINNIRNSIVDN 243          
BLAST of GE213436 vs. ExPASy Swiss-Prot
Match: IF6_TRYCR (Eukaryotic translation initiation factor 6 (Fragment) OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.934e-14
Identity = 35/68 (51.47%), Postives = 51/68 (75.00%), Query Frame = 3
Query:   21 QVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNA---IVDEMRKSLID 215
            QVP+VAGT+NRG+  IG+GL VNDW AFCG +TTATE++V+E +F+LR         ++ ++R +L+D
Sbjct:   44 QVPVVAGTINRGNAAIGSGLVVNDWAAFCGLNTTATEITVVERIFQLRRDLGGGRANLLQQLRDTLVD 111          
The following BLAST results are available for this feature:
BLAST of GE213436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
IF6_ARATH3.517e-2476.47Eukaryotic translation initiation factor 6 OS=Arab... [more]
IF6_HUMAN5.079e-2378.79Eukaryotic translation initiation factor 6 OS=Homo... [more]
IF6_BOVIN5.079e-2378.79Eukaryotic translation initiation factor 6 OS=Bos ... [more]
IF6_MOUSE1.478e-2277.27Eukaryotic translation initiation factor 6 OS=Mus ... [more]
IF6_SCHPO1.806e-2070.15Eukaryotic translation initiation factor 6 OS=Schi... [more]
IF6_DROME9.912e-1966.15Probable eukaryotic translation initiation factor ... [more]
IF6_YEAST3.766e-1864.18Eukaryotic translation initiation factor 6 OS=Sacc... [more]
IF6_CAEEL3.766e-1862.69Eukaryotic translation initiation factor 6 OS=Caen... [more]
IF6_DICDI4.919e-1860.61Probable eukaryotic translation initiation factor ... [more]
IF6_TRYCR1.934e-1451.47Eukaryotic translation initiation factor 6 (Fragme... [more]
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Properties
Property NameValue
Genbank description312 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.