GE213435

Overview
NameGE213435
Unique NameGE213435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5869 contig Csv1_Contig5869:248..568. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213435 vs. ExPASy Swiss-Prot
Match: DIOXL_ARATH (4,5-DOPA dioxygenase extradiol-like protein OS=Arabidopsis thaliana GN=At4g15093 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 9.735e-25
Identity = 48/68 (70.59%), Postives = 54/68 (79.41%), Query Frame = -2
Query:  104 VLIIGSGSATHNLRALQF---DGDSVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCAKKAHPWPDH 298
            VLIIGSGSATHNLR L F   DG  V  WA EFD+WL+D+LLQGRY DVN +E+KAP AK AHPWP+H
Sbjct:  163 VLIIGSGSATHNLRKLDFNITDGSPVP-WALEFDHWLRDSLLQGRYGDVNEWEEKAPNAKMAHPWPEH 229          

HSP 2 Score: 35.039 bits (79), Expect = 9.735e-25
Identity = 17/28 (60.71%), Postives = 17/28 (60.71%), Query Frame = -1
Query:   21 LYPLHVAMXXXXXXXXXELIHTSWQLGT 104
            LYPLHV M         E IHTSWQLGT
Sbjct:  230 LYPLHVVMGAAGGDAKAEQIHTSWQLGT 257          
BLAST of GE213435 vs. ExPASy Swiss-Prot
Match: DODA_PORGR (4,5-DOPA dioxygenase extradiol OS=Portulaca grandiflora GN=DODA PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.431e-15
Identity = 40/67 (59.70%), Postives = 46/67 (68.66%), Query Frame = -2
Query:  101 VLIIGSGSATHNLRALQFDGDSVASWASEFDNWLKDALLQGRYEDVNHYEQKAPCA-KKAHPWPDHF 298
            VL IGSG A H         D VA WA+EFD WL+DALL+GRYEDVN+Y+ KAP   K AHP P+HF
Sbjct:  167 VLFIGSGGAVHPSDDTPHWFDGVAPWAAEFDQWLEDALLEGRYEDVNNYQTKAPEGWKLAHPIPEHF 233          
The following BLAST results are available for this feature:
BLAST of GE213435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
DIOXL_ARATH9.735e-2570.594,5-DOPA dioxygenase extradiol-like protein OS=Ara... [more]
DODA_PORGR6.431e-1559.704,5-DOPA dioxygenase extradiol OS=Portulaca grandi... [more]
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Properties
Property NameValue
Genbank description310 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.