GE213432

Overview
NameGE213432
Unique NameGE213432
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2295 contig Csv1_Contig2295:272..556. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213432 vs. ExPASy Swiss-Prot
Match: PSBR_ARATH (Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.232e-18
Identity = 43/58 (74.14%), Postives = 45/58 (77.59%), Query Frame = -2
Query:   95 RYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXLVYNTSALAQ 268
            +YGANVDGYSPIYNEN+WS SGDVY GG TGLAIWAVT          LVYNTSALAQ
Sbjct:   83 KYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 140          
BLAST of GE213432 vs. ExPASy Swiss-Prot
Match: PSBR_TOBAC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.063e-17
Identity = 42/58 (72.41%), Postives = 45/58 (77.59%), Query Frame = -2
Query:   95 RYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXLVYNTSALAQ 268
            +YGANVDGYSPIYN +DWSPSGDVY GG TGLAIWAVT          LV+NTSALAQ
Sbjct:   79 KYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALAQ 136          
BLAST of GE213432 vs. ExPASy Swiss-Prot
Match: PSBR_SOLTU (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.063e-17
Identity = 42/58 (72.41%), Postives = 45/58 (77.59%), Query Frame = -2
Query:   95 RYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXLVYNTSALAQ 268
            +YGANVDGYSPIYN ++WSPSGDVY GG TGLAIWAVT          LVYNTSALAQ
Sbjct:   81 KYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVYNTSALAQ 138          
BLAST of GE213432 vs. ExPASy Swiss-Prot
Match: PSBR_SOLLC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.063e-17
Identity = 42/58 (72.41%), Postives = 45/58 (77.59%), Query Frame = -2
Query:   95 RYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXLVYNTSALAQ 268
            +YGANVDGYSPIYN ++WSPSGDVY GG TGLAIWAVT          LVYNTSALAQ
Sbjct:   81 KYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALAQ 138          
BLAST of GE213432 vs. ExPASy Swiss-Prot
Match: PSBR_BRACM (Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.368e-17
Identity = 42/58 (72.41%), Postives = 45/58 (77.59%), Query Frame = -2
Query:   95 RYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXLVYNTSALAQ 268
            +YGANVDGYSPIYNE++WS SGDVY GG TGLAIWAVT          LVYNTSALAQ
Sbjct:   84 KYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 141          
BLAST of GE213432 vs. ExPASy Swiss-Prot
Match: PSBR_SPIOL (Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.275e-17
Identity = 40/58 (68.97%), Postives = 44/58 (75.86%), Query Frame = -2
Query:   95 RYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXLVYNTSALAQ 268
            +YGANVDGYSPIYNE +W+P+GDVY GG TGL IWAVT          LVYNTSALAQ
Sbjct:   83 KYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLLAGGALLVYNTSALAQ 140          
BLAST of GE213432 vs. ExPASy Swiss-Prot
Match: PSBR_HORVU (Photosystem II 10 kDa polypeptide, chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.100e-14
Identity = 37/57 (64.91%), Postives = 41/57 (71.93%), Query Frame = -2
Query:   98 RYGANVDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTXXXXXXXXXXLVYNTSALA 268
            +YGANVDGYSPIY   +WSPSGDVY GG TGL +WAVT          LVY+TSALA
Sbjct:   81 KYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLAGILLGGALLVYSTSALA 137          
The following BLAST results are available for this feature:
BLAST of GE213432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PSBR_ARATH6.232e-1874.14Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_TOBAC1.063e-1772.41Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SOLTU1.063e-1772.41Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SOLLC1.063e-1772.41Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_BRACM2.368e-1772.41Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SPIOL5.275e-1768.97Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_HORVU1.100e-1464.91Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
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Properties
Property NameValue
Genbank description307 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.