GE213424 | Citrus Genome Database

Overview


Name	GE213424
Unique Name	GE213424
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	1

Libraries


Library Name	Type
BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig13402	contig	Csv1_Contig13402:241..697.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

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BLAST of GE213424 vs. ExPASy Swiss-Prot
Match: PLZ12_LUPPO (Protein PPLZ12 OS=Lupinus polyphyllus GN=PPLZ12 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.173e-15
Identity = 40/59 (67.80%), Postives = 49/59 (83.05%), Query Frame = 1

Query:  259 AARMRLAANEKAEAEKILQIKRAEGEAESKYLAGLGIARQRQAIVDGLRDSVLAFSENV 435
            A RM+LA+  K EAEKILQ+KRAE EAE+KYL G+G+ARQRQAI DGLR+++L FS  V
Sbjct:   56 AQRMQLASLYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKV 114

The following BLAST results are available for this feature:

BLAST of GE213424 vs. ExPASy Swiss-Prot

BLAST of GE213424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1


Match Name	E-value	Identity	Description
PLZ12_LUPPO	2.173e-15	67.80	Protein PPLZ12 OS=Lupinus polyphyllus GN=PPLZ12 PE...	[more]

Properties


Property Name	Value
Genbank description	298 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.