GE213422

Overview
NameGE213422
Unique NameGE213422
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4030 contig Csv1_Contig4030:346..799. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of GE213422 vs. ExPASy Swiss-Prot
Match: H2A_EUPES (Histone H2A OS=Euphorbia esula PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 6.539e-28
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:    1 ISVVAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 198
            +  +AAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK+
Sbjct:   64 LEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKA 129
[Close]
BLAST of GE213422 vs. ExPASy Swiss-Prot
Match: H2A2_MEDTR (Probable histone H2A.2 OS=Medicago truncatula GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 6.539e-28
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:    1 ISVVAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 198
            +  +AAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK+
Sbjct:   64 LEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 129
[Close]
BLAST of GE213422 vs. ExPASy Swiss-Prot
Match: H2A6_ORYSJ (Probable histone H2A.6 OS=Oryza sativa subsp. japonica GN=Os05g0113900 PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 8.540e-28
Identity = 60/66 (90.91%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:    1 ISVVAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 198
            +  +AAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNINPVLLPKK+
Sbjct:   66 LEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 131
[Close]
BLAST of GE213422 vs. ExPASy Swiss-Prot
Match: H2A6_ORYSI (Probable histone H2A.6 OS=Oryza sativa subsp. indica GN=OsI_017523 PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 8.540e-28
Identity = 60/66 (90.91%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:    1 ISVVAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 198
            +  +AAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNINPVLLPKK+
Sbjct:   66 LEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 131
[Close]
BLAST of GE213422 vs. ExPASy Swiss-Prot
Match: H2A5_ORYSJ (Probable histone H2A.5 OS=Oryza sativa subsp. japonica GN=Os01g0502700 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 8.540e-28
Identity = 60/66 (90.91%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:    1 ISVVAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 198
            +  +AAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNINPVLLPKK+
Sbjct:   69 LEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 134
[Close]
BLAST of GE213422 vs. ExPASy Swiss-Prot
Match: H2A5_ORYSI (Probable histone H2A.5 OS=Oryza sativa subsp. indica GN=OsI_002060 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 8.540e-28
Identity = 60/66 (90.91%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:    1 ISVVAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 198
            +  +AAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNINPVLLPKK+
Sbjct:   69 LEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 134
[Close]
BLAST of GE213422 vs. ExPASy Swiss-Prot
Match: H2A4_ORYSJ (Probable histone H2A.4 OS=Oryza sativa subsp. japonica GN=Os05g0461400 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 8.540e-28
Identity = 60/66 (90.91%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:    1 ISVVAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 198
            +  +AAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNINPVLLPKK+
Sbjct:   67 LEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 132
[Close]
BLAST of GE213422 vs. ExPASy Swiss-Prot
Match: H2A4_ORYSI (Probable histone H2A.4 OS=Oryza sativa subsp. indica GN=OsI_019561 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 8.540e-28
Identity = 60/66 (90.91%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:    1 ISVVAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 198
            +  +AAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNINPVLLPKK+
Sbjct:   67 LEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 132
[Close]
BLAST of GE213422 vs. ExPASy Swiss-Prot
Match: H2A1_MEDTR (Probable histone H2A.1 OS=Medicago truncatula GN=MtrDRAFT_AC149210g1v1 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 8.540e-28
Identity = 60/66 (90.91%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:    1 ISVVAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 198
            +  +AAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINP+LLPKK+
Sbjct:   63 LEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPILLPKKN 128
[Close]
BLAST of GE213422 vs. ExPASy Swiss-Prot
Match: H2A3_MEDTR (Probable histone H2A.3 OS=Medicago truncatula PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.902e-27
Identity = 59/66 (89.39%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:    1 ISVVAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 198
            +  +AAEVLELAGNAARDNKKNRIIPRH+LLAVRNDEELGKLLAGVTIAHGGVLPNINP+LLPKK+
Sbjct:   65 LEYLAAEVLELAGNAARDNKKNRIIPRHLLLAVRNDEELGKLLAGVTIAHGGVLPNINPILLPKKT 130
The following BLAST results are available for this feature:
BLAST of GE213422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
H2A_EUPES6.539e-2892.42Histone H2A OS=Euphorbia esula PE=2 SV=1[more]
H2A2_MEDTR6.539e-2892.42Probable histone H2A.2 OS=Medicago truncatula GN=M... [more]
H2A6_ORYSJ8.540e-2890.91Probable histone H2A.6 OS=Oryza sativa subsp. japo... [more]
H2A6_ORYSI8.540e-2890.91Probable histone H2A.6 OS=Oryza sativa subsp. indi... [more]
H2A5_ORYSJ8.540e-2890.91Probable histone H2A.5 OS=Oryza sativa subsp. japo... [more]
H2A5_ORYSI8.540e-2890.91Probable histone H2A.5 OS=Oryza sativa subsp. indi... [more]
H2A4_ORYSJ8.540e-2890.91Probable histone H2A.4 OS=Oryza sativa subsp. japo... [more]
H2A4_ORYSI8.540e-2890.91Probable histone H2A.4 OS=Oryza sativa subsp. indi... [more]
H2A1_MEDTR8.540e-2890.91Probable histone H2A.1 OS=Medicago truncatula GN=M... [more]
H2A3_MEDTR1.902e-2789.39Probable histone H2A.3 OS=Medicago truncatula PE=3... [more]

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Properties
Property NameValue
Genbank description296 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.