GE213420

Overview
NameGE213420
Unique NameGE213420
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13714 contig Csv1_Contig13714:1..1056. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213420 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 209.149 bits (531), Expect = 3.402e-53
Identity = 108/159 (67.92%), Postives = 124/159 (77.99%), Query Frame = -2
Query:   82 MSLIPSIFGGRRTNVFDPVSLDVRDPFDGFLS-SALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 555
            MSLIPSIFGGRRTNVFDP SLDV DPF+GFL+ S L NAP  A + + F NA++DW+ETP+AHVFKADLPGLR         +G ILQISGERS E EEKNDKWHRVERSSGKF RRFRLP+NAK+E++KASMENGVL+VT           K+I+ISG
Sbjct:    1 MSLIPSIFGGRRTNVFDPFSLDVFDPFEGFLTPSGLANAP--AMDVAAFTNAKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTVPKVPEKKPEVKSIDISG 157          
BLAST of GE213420 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 208.764 bits (530), Expect = 4.443e-53
Identity = 103/158 (65.19%), Postives = 124/158 (78.48%), Query Frame = -2
Query:   82 MSLIPSIFGGRRTNVFDPVSLDVRDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 555
            MSL+PS FGGRRTNVFDP SLDV DPF+GFL+  LTNAP  A++ + F NA++DW+ETP+AHVFKAD+PGL+         +G ILQISGERS E EEK+D WHRVERSSGKF+RRFRLP+NAKVE+VKASMENGVL+VT           K+++ISG
Sbjct:    1 MSLVPSFFGGRRTNVFDPFSLDVWDPFEGFLTPGLTNAP--AKDVAAFTNAKVDWRETPEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTVPKVQESKPEVKSVDISG 156          
BLAST of GE213420 vs. ExPASy Swiss-Prot
Match: HS181_ARATH (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 4.913e-52
Identity = 106/160 (66.25%), Postives = 125/160 (78.12%), Query Frame = -2
Query:   82 MSLIPSIFGGRRTNVFDPVSLDVRDPFDGFL--SSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 555
            MSLIPSIFGGRR+NVFDP S D+ DPF+GF   SSAL NA S+AR+ + F NAR+DWKETP+AHVFKADLPGL+         +  +LQISGERSKE EEKNDKWHRVER+SGKF+RRFRLP+NAK+E+VKA+MENGVLTV            K+I+ISG
Sbjct:    1 MSLIPSIFGGRRSNVFDPFSQDLWDPFEGFFTPSSALANA-STARDVAAFTNARVDWKETPEAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKMEEVKATMENGVLTVVVPKAPEKKPQVKSIDISG 159          
BLAST of GE213420 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 6.005e-50
Identity = 102/158 (64.56%), Postives = 119/158 (75.32%), Query Frame = -2
Query:   82 MSLIPSIFGGRRTNVFDPVSLDVRDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 555
            MS+IPS FGGRR+NVFDP SLDV DPF  F     ++A    +ET+ F N  IDWKETPQAHVFKADLPGL+         EG++LQISGER+KE+EEKNDKWHRVERSSGKFLRRFRLP+NAKV++VKA+M NGV+TVT           KAI+ISG
Sbjct:    1 MSIIPSFFGGRRSNVFDPFSLDVWDPFKDF-PLVTSSASEFGKETAAFVNTHIDWKETPQAHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVTVPKVEIKKPEVKAIDISG 157          
BLAST of GE213420 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.980e-49
Identity = 104/163 (63.80%), Postives = 120/163 (73.62%), Query Frame = -2
Query:   82 MSLIPSIFGGRRTNVFDPVSLDVRDPFDGF-----LSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 555
            MSLIP+ FGGRR NVFDP SLDV DPF  F     LSSA  + P  +RE S F + R+DWKETP+AHVFKAD+PGL+         + ++LQISGER+ E+E+KND WHRVERSSGKF+RRFRLP+NAKVEQVKASMENGVLTVT           KAIEISG
Sbjct:    1 MSLIPNFFGGRRNNVFDPFSLDVWDPFKDFPFPNTLSSA--SFPEFSRENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 161          
BLAST of GE213420 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 2.523e-48
Identity = 102/159 (64.15%), Postives = 118/159 (74.21%), Query Frame = -2
Query:   82 MSLIPSIFGGRRTNVFDPVSLDVRDPFDGFLSSALTNAPSS-ARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 555
            MSLIPSIFGGRR+NVFDP SLDV DPF  F      + P+S + E S F N R+DWKETP+AHVF+AD+PGL+         + R+LQISGER+ E+E+KND WHRVERSSG F+RRFRLP+NAKVEQVKASMENGVLTVT           KAIEISG
Sbjct:    1 MSLIPSIFGGRRSNVFDPFSLDVWDPFKDF------HFPTSLSAENSAFVNTRVDWKETPEAHVFEADIPGLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSSGNFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 153          
BLAST of GE213420 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 3.295e-48
Identity = 97/158 (61.39%), Postives = 117/158 (74.05%), Query Frame = -2
Query:   82 MSLIPSIFGGRRTNVFDPVSLDVRDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 555
            MSLIPS FGGRR+NVFDP SLDV DPF  F  +    + S  RE S F + R+DWKETP+AHVFKADLPG++         + R+LQISGERS E+E+KND+WHR+ERSSGKF+RRFRLP+NAK++QVKA+MENGVLTVT           K I+ISG
Sbjct:    1 MSLIPSFFGGRRSNVFDPFSLDVWDPFKDFPFNNSALSASFPRENSAFVSTRVDWKETPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEVKKPEVKTIDISG 158          
BLAST of GE213420 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 5.621e-48
Identity = 99/158 (62.66%), Postives = 116/158 (73.42%), Query Frame = -2
Query:   82 MSLIPSIFGGRRTNVFDPVSLDVRDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 555
            MSLIPS F GRR+NVFDP SLDV DP   F  S  + + S  RE   F + R+DWKETP+AHVFKADLPGL+         + R+LQISGERS E+E+KND+WHRVERSSGKFLRRFRLP+NAK+++VKASMENGVLTVT           K+IEISG
Sbjct:    1 MSLIPSFFSGRRSNVFDPFSLDVWDPLKDFPFSNSSPSASFPRENPAFVSTRVDWKETPEAHVFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVTVPKEEIKKAEVKSIEISG 158          
BLAST of GE213420 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 4.758e-47
Identity = 100/159 (62.89%), Postives = 117/159 (73.58%), Query Frame = -2
Query:   82 MSLIPSIFGGRRTNVFDPVSLDVRDPFDGFLSSALTNAPSS-ARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 555
            MSLIPS FGGRR++VFDP SLDV DPF  F        PSS + E S F + R+DWKETP+AHVFKAD+PGL+         +GR+LQISGER+ E+E+KND WHRVERSSGK +RRFRLP+NAKV+QVKASMENGVLTVT           KAI+ISG
Sbjct:    1 MSLIPSFFGGRRSSVFDPFSLDVWDPFKDF------PFPSSLSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKLEIQDGRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLPENAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIDISG 153          
BLAST of GE213420 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 2.362e-46
Identity = 98/160 (61.25%), Postives = 115/160 (71.88%), Query Frame = -2
Query:   82 MSLIPSIFGGRRTNVFDPVSLDVRDPFDGFLSSALTNAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 555
            MSLIP  FGGRR+NVFDP SLD+ DPF  F      + P+S+   E S F + R+DWKETP+AHVFKAD+PGL+         + R+LQISGER+ E+E+KND WHRVERSSGKF RRFRLP+NAKV +VKASMENGVLTVT           KAIEISG
Sbjct:    1 MSLIPGFFGGRRSNVFDPFSLDMWDPFKDF------HVPTSSVSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVERSSGKFTRRFRLPENAKVNEVKASMENGVLTVTVPKEEVKKPDVKAIEISG 154          
The following BLAST results are available for this feature:
BLAST of GE213420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HS17C_ARATH3.402e-5367.9217.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HSP17_ARATH4.443e-5365.1917.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HS181_ARATH4.913e-5266.2518.1 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP11_DAUCA6.005e-5064.5617.8 kDa class I heat shock protein OS=Daucus caro... [more]
HSP16_SOYBN2.980e-4963.8018.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP13_SOYBN2.523e-4864.1517.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_MEDSA3.295e-4861.3918.2 kDa class I heat shock protein OS=Medicago sa... [more]
HSP11_PEA5.621e-4862.6618.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HSP11_SOYBN4.758e-4762.8917.3 kDa class I heat shock protein OS=Glycine max... [more]
HSP14_SOYBN2.362e-4661.2517.5 kDa class I heat shock protein OS=Glycine max... [more]

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Properties
Property NameValue
Genbank description294 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.