GE213419

Overview
NameGE213419
Unique NameGE213419
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1497 contig Csv1_Contig1497:274..549. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213419 vs. ExPASy Swiss-Prot
Match: AGL9_SOLLC (Agamous-like MADS-box protein AGL9 homolog OS=Solanum lycopersicum GN=TDR5 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.955e-35
Identity = 72/80 (90.00%), Postives = 77/80 (96.25%), Query Frame = 2
Query:   20 RYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKKLESLERQLDMSLKQIRSTRTQYL 259
            RYQKCNYGAPEPN+S REALE+SSQQEYLKLK RYEALQRSQRNLLGE+LGPLNSK+LESLERQLDMSLKQIRSTRTQ +
Sbjct:   69 RYQKCNYGAPEPNISTREALEISSQQEYLKLKGRYEALQRSQRNLLGEDLGPLNSKELESLERQLDMSLKQIRSTRTQLM 148          
BLAST of GE213419 vs. ExPASy Swiss-Prot
Match: AGL9_PETHY (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 5.688e-35
Identity = 72/80 (90.00%), Postives = 77/80 (96.25%), Query Frame = 2
Query:   20 RYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKKLESLERQLDMSLKQIRSTRTQYL 259
            RYQKCNYGAPE N+S REALE+SSQQEYLKLKARYEALQRSQRNLLGE+LGPLNSK+LESLERQLDMSLKQIRSTRTQ +
Sbjct:   69 RYQKCNYGAPETNISTREALEISSQQEYLKLKARYEALQRSQRNLLGEDLGPLNSKELESLERQLDMSLKQIRSTRTQLM 148          
BLAST of GE213419 vs. ExPASy Swiss-Prot
Match: MTF1_PEA (MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.815e-31
Identity = 67/82 (81.71%), Postives = 77/82 (93.90%), Query Frame = 2
Query:   20 RYQKCNYGAPEPNVSAREAL--ELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKKLESLERQLDMSLKQIRSTRTQYL 259
            RYQKCNYGAPE NV+++EAL  ELSSQQEYLKLKARYE+LQRSQRNL+GE+LGPL+SK LE+LERQLD SLKQIRSTRTQ++
Sbjct:   69 RYQKCNYGAPEGNVTSKEALVLELSSQQEYLKLKARYESLQRSQRNLMGEDLGPLSSKDLETLERQLDSSLKQIRSTRTQFM 150          
BLAST of GE213419 vs. ExPASy Swiss-Prot
Match: SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.500e-31
Identity = 66/82 (80.49%), Postives = 76/82 (92.68%), Query Frame = 2
Query:   20 RYQKCNYGAPEPNVSAREAL--ELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKKLESLERQLDMSLKQIRSTRTQYL 259
            RYQKCNYGAPEPNV +REAL  ELSSQQEYLKLK RY+ALQR+QRNLLGE+LGPL++K+LESLERQLD SLKQIR+ RTQ++
Sbjct:   69 RYQKCNYGAPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDLGPLSTKELESLERQLDSSLKQIRALRTQFM 150          
BLAST of GE213419 vs. ExPASy Swiss-Prot
Match: AGL9_SINAL (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.603e-29
Identity = 64/82 (78.05%), Postives = 74/82 (90.24%), Query Frame = 2
Query:   20 RYQKCNYGAPEPNVSAREAL--ELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKKLESLERQLDMSLKQIRSTRTQYL 259
            RYQKCNYG PEPNV +REAL  ELSSQQEYLKLK RY+ALQR+QRNLLGE+LGPL++K+LE LERQLD SLKQIR+ RTQ++
Sbjct:   69 RYQKCNYGPPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDLGPLSTKELELLERQLDSSLKQIRALRTQFM 150          
BLAST of GE213419 vs. ExPASy Swiss-Prot
Match: AGL9_ARADE (Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.075e-25
Identity = 58/80 (72.50%), Postives = 68/80 (85.00%), Query Frame = 2
Query:   20 RYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKKLESLERQLDMSLKQIRSTRTQYL 259
            +YQKCN+G+PE  + +RE    SSQQEYLKLK R EALQRSQRNLLGE+LGPL SK+LE LERQLD SL+QIRSTRTQ++
Sbjct:   69 KYQKCNFGSPESTIISRETQ--SSQQEYLKLKNRVEALQRSQRNLLGEDLGPLGSKELEQLERQLDSSLRQIRSTRTQFM 146          
BLAST of GE213419 vs. ExPASy Swiss-Prot
Match: SEP1_ARATH (Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 2.242e-23
Identity = 55/80 (68.75%), Postives = 65/80 (81.25%), Query Frame = 2
Query:   20 RYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKKLESLERQLDMSLKQIRSTRTQYL 259
            RYQKC+YG+ E N    + LE +S +EYLKLK RYE LQR QRNLLGE+LGPLNSK+LE LERQLD SLKQ+RS +TQY+
Sbjct:   69 RYQKCSYGSIEVNNKPAKELE-NSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRSIKTQYM 147          
BLAST of GE213419 vs. ExPASy Swiss-Prot
Match: SEP2_ARATH (Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.520e-23
Identity = 54/80 (67.50%), Postives = 64/80 (80.00%), Query Frame = 2
Query:   20 RYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKKLESLERQLDMSLKQIRSTRTQYL 259
            RYQKC+YG+ E N    + LE +S +EYLKLK RYE LQR QRNLLGE+LGPLNSK+LE LERQLD SLKQ+R  +TQY+
Sbjct:   69 RYQKCSYGSIEVNNKPAKELE-NSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRCIKTQYM 147          
BLAST of GE213419 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSJ (MADS-box transcription factor 7 OS=Oryza sativa subsp. japonica GN=MADS7 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 3.030e-20
Identity = 50/81 (61.73%), Postives = 64/81 (79.01%), Query Frame = 2
Query:   20 RYQKCNYGAPEPNVSAREALEL-SSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKKLESLERQLDMSLKQIRSTRTQYL 259
            +YQKC+Y  PE  V  RE+ +L +S+ EYLKLKAR E LQR+QRNLLGE+L  L  K+LESLE+QLD SLK +R+TRT++L
Sbjct:   69 KYQKCSYAGPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRNLLGEDLDSLGIKELESLEKQLDSSLKHVRTTRTKHL 149          
BLAST of GE213419 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSI (MADS-box transcription factor 7 OS=Oryza sativa subsp. indica GN=MADS7 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 3.030e-20
Identity = 50/81 (61.73%), Postives = 64/81 (79.01%), Query Frame = 2
Query:   20 RYQKCNYGAPEPNVSAREALEL-SSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKKLESLERQLDMSLKQIRSTRTQYL 259
            +YQKC+Y  PE  V  RE+ +L +S+ EYLKLKAR E LQR+QRNLLGE+L  L  K+LESLE+QLD SLK +R+TRT++L
Sbjct:   69 KYQKCSYAGPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRNLLGEDLDSLGIKELESLEKQLDSSLKHVRTTRTKHL 149          
The following BLAST results are available for this feature:
BLAST of GE213419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
AGL9_SOLLC1.955e-3590.00Agamous-like MADS-box protein AGL9 homolog OS=Sola... [more]
AGL9_PETHY5.688e-3590.00Agamous-like MADS-box protein AGL9 homolog OS=Petu... [more]
MTF1_PEA3.815e-3181.71MADS-box transcription factor 1 OS=Pisum sativum G... [more]
SEP3_ARATH8.500e-3180.49Developmental protein SEPALLATA 3 OS=Arabidopsis t... [more]
AGL9_SINAL1.603e-2978.05Agamous-like MADS-box protein AGL9 homolog OS=Sina... [more]
AGL9_ARADE1.075e-2572.50Agamous-like MADS-box protein AGL9 homolog OS=Aran... [more]
SEP1_ARATH2.242e-2368.75Developmental protein SEPALLATA 1 OS=Arabidopsis t... [more]
SEP2_ARATH8.520e-2367.50Developmental protein SEPALLATA 2 OS=Arabidopsis t... [more]
MADS7_ORYSJ3.030e-2061.73MADS-box transcription factor 7 OS=Oryza sativa su... [more]
MADS7_ORYSI3.030e-2061.73MADS-box transcription factor 7 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank description292 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.