GE213404

Overview
NameGE213404
Unique NameGE213404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12605 contig Csv1_Contig12605:233..759. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213404 vs. ExPASy Swiss-Prot
Match: MDHC_MAIZE (Malate dehydrogenase, cytoplasmic OS=Zea mays PE=2 SV=2)

HSP 1 Score: 309.301 bits (791), Expect = 7.136e-84
Identity = 155/167 (92.81%), Postives = 159/167 (95.21%), Query Frame = -2
Query:   24 RGRGRGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQAFALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQY 524
            RG   G DQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTD VEACTGVN+AVMVGGFPRKEGMERKDVMSKNVSIYK+QA ALE HAAPNCKVLVVANPANTNALILKEFAPSIP KN+TCLTRLDHNRALGQISE+LNVQVSDVKNVIIWGNHSSSQY
Sbjct:   27 RGVMLGADQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDVVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEAHAAPNCKVLVVANPANTNALILKEFAPSIPEKNVTCLTRLDHNRALGQISERLNVQVSDVKNVIIWGNHSSSQY 193          
BLAST of GE213404 vs. ExPASy Swiss-Prot
Match: MDHC_MESCR (Malate dehydrogenase, cytoplasmic OS=Mesembryanthemum crystallinum GN=MDH PE=2 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 6.041e-83
Identity = 154/167 (92.22%), Postives = 159/167 (95.21%), Query Frame = -2
Query:   24 RGRGRGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQAFALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQY 524
            RG   G +QPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDA EAC GVN+AVMVGGFPRKEGMERKDVMSKNVSIYKAQA ALEQHAAPNCKVLVVANPANTNALILKEFAPSIP KNI+CLTRLDHNRALGQISE+LNVQVSDVKNVIIWGNHSS+QY
Sbjct:   27 RGIMLGANQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAAEACKGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPNCKVLVVANPANTNALILKEFAPSIPEKNISCLTRLDHNRALGQISERLNVQVSDVKNVIIWGNHSSTQY 193          
BLAST of GE213404 vs. ExPASy Swiss-Prot
Match: MDHC1_ARATH (Malate dehydrogenase, cytoplasmic 1 OS=Arabidopsis thaliana GN=At1g04410 PE=1 SV=2)

HSP 1 Score: 304.294 bits (778), Expect = 2.296e-82
Identity = 152/167 (91.02%), Postives = 159/167 (95.21%), Query Frame = -2
Query:   24 RGRGRGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQAFALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQY 524
            RG   G DQPVILHMLDIPPAAEALNGVKMEL+DAAFPLLKGVVATTDAVE CTGVN+AVMVGGFPRKEGMERKDVMSKNVSIYK+QA ALE+HAAPNCKVLVVANPANTNALILKEFAPSIP KNI+CLTRLDHNRALGQISE+L+V VSDVKNVIIWGNHSSSQY
Sbjct:   27 RGIMLGADQPVILHMLDIPPAAEALNGVKMELIDAAFPLLKGVVATTDAVEGCTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQAAALEKHAAPNCKVLVVANPANTNALILKEFAPSIPEKNISCLTRLDHNRALGQISERLSVPVSDVKNVIIWGNHSSSQY 193          
BLAST of GE213404 vs. ExPASy Swiss-Prot
Match: MDHC_ORYSJ (Malate dehydrogenase, cytoplasmic OS=Oryza sativa subsp. japonica GN=Os10g0478200 PE=1 SV=3)

HSP 1 Score: 302.753 bits (774), Expect = 6.680e-82
Identity = 150/167 (89.82%), Postives = 157/167 (94.01%), Query Frame = -2
Query:   24 RGRGRGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQAFALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQY 524
            RG   G DQPVILHMLDIPPA E+LNG+KMELVDAAFPLLKG+VATTD VEACTGVN+AVMVGGFPRKEGMERKDVMSKNVSIYK+QA ALE HAAPNCKVLVVANPANTNALILKEFAPSIP KNITCLTRLDHNRALGQISEKLNVQV+DVKN IIWGNHSS+QY
Sbjct:   27 RGVMLGADQPVILHMLDIPPATESLNGLKMELVDAAFPLLKGIVATTDVVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEAHAAPNCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISEKLNVQVTDVKNAIIWGNHSSTQY 193          
BLAST of GE213404 vs. ExPASy Swiss-Prot
Match: MDHC2_ARATH (Malate dehydrogenase, cytoplasmic 2 OS=Arabidopsis thaliana GN=At5g43330 PE=2 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 1.139e-81
Identity = 152/167 (91.02%), Postives = 159/167 (95.21%), Query Frame = -2
Query:   24 RGRGRGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQAFALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQY 524
            RG   G DQPVILHMLDIP AAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVN+AVMVGGFPRKEGMERKDVMSKNVSIYK+QA ALE+HAAPNCKVLVVANPANTNALILKEFAPSIP KNITCLTRLDHNRALGQ+SE+L+V VSDVKNVIIWGNHSS+QY
Sbjct:   27 RGIMLGADQPVILHMLDIPFAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAPNCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQVSERLSVPVSDVKNVIIWGNHSSTQY 193          
BLAST of GE213404 vs. ExPASy Swiss-Prot
Match: MDHC_BETVU (Malate dehydrogenase, cytoplasmic OS=Beta vulgaris GN=NR1 PE=1 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 3.315e-81
Identity = 151/167 (90.42%), Postives = 156/167 (93.41%), Query Frame = -2
Query:   24 RGRGRGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQAFALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQY 524
            RG   G +QPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTD  EAC GVN+AVMVGGFPRKEGMERKDVM KNVSIYK+QA ALEQ+AAPNCKVLVVANPANTNALILKEFAPSIP KNITCLTRLDHNRALGQISE+LN QVSDVKNVIIWGNHSSSQY
Sbjct:   27 RGVMLGANQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDVAEACKGVNVAVMVGGFPRKEGMERKDVMPKNVSIYKSQASALEQYAAPNCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISERLNAQVSDVKNVIIWGNHSSSQY 193          
BLAST of GE213404 vs. ExPASy Swiss-Prot
Match: MDHC_MEDSA (Malate dehydrogenase, cytoplasmic OS=Medicago sativa GN=CMDH PE=2 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 7.385e-81
Identity = 151/167 (90.42%), Postives = 158/167 (94.61%), Query Frame = -2
Query:   24 RGRGRGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQAFALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQY 524
            RG   G DQPVILHMLDI PAAE+LNGVKMELVDAAFPLLKGVVATTD VEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYK+QA ALE+HAA NCKVLVVANPANTNALILKEFAPSIP +NI+CLTRLDHNRALGQISE+LNVQVSDVKNVIIWGNHSS+QY
Sbjct:   27 RGVMLGPDQPVILHMLDIAPAAESLNGVKMELVDAAFPLLKGVVATTDVVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAANCKVLVVANPANTNALILKEFAPSIPERNISCLTRLDHNRALGQISERLNVQVSDVKNVIIWGNHSSTQY 193          
BLAST of GE213404 vs. ExPASy Swiss-Prot
Match: MDHC_XENTR (Malate dehydrogenase, cytoplasmic OS=Xenopus tropicalis GN=mdh1 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 3.132e-47
Identity = 94/162 (58.02%), Postives = 117/162 (72.22%), Query Frame = -2
Query:   24 GTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQAFALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQY 509
            G DQP+IL +LDI P    L GV MEL D A PLLK V+AT     A   +++A++VG  PR+EGMERKD++  NV I+K+Q  AL +++  + KV+VV NPANTN L   + APSIP +N +CLTRLDHNRA GQI+ KLNV   DVKNVIIWGNHSS+QY
Sbjct:   31 GKDQPLILVLLDITPMMTVLEGVVMELQDCALPLLKEVIATDKEDVAFKDLDVAILVGSMPRREGMERKDLLKANVKIFKSQGAALNKYSKKSVKVIVVGNPANTNCLTAMKSAPSIPKENFSCLTRLDHNRAKGQIALKLNVASDDVKNVIIWGNHSSTQY 192          
BLAST of GE213404 vs. ExPASy Swiss-Prot
Match: MDHC_RAT (Malate dehydrogenase, cytoplasmic OS=Rattus norvegicus GN=Mdh1 PE=1 SV=3)

HSP 1 Score: 187.578 bits (475), Expect = 3.132e-47
Identity = 94/162 (58.02%), Postives = 117/162 (72.22%), Query Frame = -2
Query:   24 GTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQAFALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQY 509
            G DQP+IL +LDI P    L+GV MEL D A PLL+ V+AT     A   +++AV+VG  PR+EGMERKD++  NV I+K+Q  ALE++A  + KV+VV NPANTN L   + APSIP +N +CLTRLDHNRA  QI+ KL V   DVKNVIIWGNHSS+QY
Sbjct:   31 GKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLQDVIATDKEEVAFKDLDVAVLVGSMPRREGMERKDLLKANVKIFKSQGAALEKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKSQIALKLGVTADDVKNVIIWGNHSSTQY 192          
BLAST of GE213404 vs. ExPASy Swiss-Prot
Match: MDHC_HUMAN (Malate dehydrogenase, cytoplasmic OS=Homo sapiens GN=MDH1 PE=1 SV=4)

HSP 1 Score: 187.578 bits (475), Expect = 3.132e-47
Identity = 93/162 (57.41%), Postives = 118/162 (72.84%), Query Frame = -2
Query:   24 GTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVVATTDAVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQAFALEQHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISEKLNVQVSDVKNVIIWGNHSSSQY 509
            G DQP+IL +LDI P    L+GV MEL D A PLLK V+AT     A   +++A++VG  PR+EGMERKD++  NV I+K+Q  AL+++A  + KV+VV NPANTN L   + APSIP +N +CLTRLDHNRA  QI+ KL V  +DVKNVIIWGNHSS+QY
Sbjct:   31 GKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEDVAFKDLDVAILVGSMPRREGMERKDLLKANVKIFKSQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTANDVKNVIIWGNHSSTQY 192          
The following BLAST results are available for this feature:
BLAST of GE213404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
MDHC_MAIZE7.136e-8492.81Malate dehydrogenase, cytoplasmic OS=Zea mays PE=2... [more]
MDHC_MESCR6.041e-8392.22Malate dehydrogenase, cytoplasmic OS=Mesembryanthe... [more]
MDHC1_ARATH2.296e-8291.02Malate dehydrogenase, cytoplasmic 1 OS=Arabidopsis... [more]
MDHC_ORYSJ6.680e-8289.82Malate dehydrogenase, cytoplasmic OS=Oryza sativa ... [more]
MDHC2_ARATH1.139e-8191.02Malate dehydrogenase, cytoplasmic 2 OS=Arabidopsis... [more]
MDHC_BETVU3.315e-8190.42Malate dehydrogenase, cytoplasmic OS=Beta vulgaris... [more]
MDHC_MEDSA7.385e-8190.42Malate dehydrogenase, cytoplasmic OS=Medicago sati... [more]
MDHC_XENTR3.132e-4758.02Malate dehydrogenase, cytoplasmic OS=Xenopus tropi... [more]
MDHC_RAT3.132e-4758.02Malate dehydrogenase, cytoplasmic OS=Rattus norveg... [more]
MDHC_HUMAN3.132e-4757.41Malate dehydrogenase, cytoplasmic OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank description274 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.