GE213392

Overview
NameGE213392
Unique NameGE213392
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig239 contig Csv1_Contig239:435..646. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213392 vs. ExPASy Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.810e-18
Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = 3
Query:   30 ILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVY 191
            ++YW+AQLLGS VACLLLK  T G    AF+LS+GVGAWNAVVFEIVMTFGLVY
Sbjct:  104 VVYWVAQLLGSVVACLLLKIATGGAAVGAFSLSAGVGAWNAVVFEIVMTFGLVY 157          
BLAST of GE213392 vs. ExPASy Swiss-Prot
Match: TIP13_ARATH (Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.072e-17
Identity = 42/54 (77.78%), Postives = 45/54 (83.33%), Query Frame = 3
Query:   30 ILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVY 191
            ILYWIAQLLG+ VACLLLK  T G  T+AF+LS GV  WNAVVFEIVMTFGLVY
Sbjct:  104 ILYWIAQLLGAVVACLLLKVSTGGMETAAFSLSYGVTPWNAVVFEIVMTFGLVY 157          
BLAST of GE213392 vs. ExPASy Swiss-Prot
Match: TIP11_ARATH (Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.447e-16
Identity = 41/54 (75.93%), Postives = 43/54 (79.63%), Query Frame = 3
Query:   30 ILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVY 191
            ILYWIAQLLGS VACL+LKF T G    AF LS+GVG  NA VFEIVMTFGLVY
Sbjct:  104 ILYWIAQLLGSVVACLILKFATGGLAVPAFGLSAGVGVLNAFVFEIVMTFGLVY 157          
BLAST of GE213392 vs. ExPASy Swiss-Prot
Match: TIP12_ARATH (Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.711e-15
Identity = 39/54 (72.22%), Postives = 43/54 (79.63%), Query Frame = 3
Query:   30 ILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVY 191
            ILYWIAQLLGS  AC LL F T G+   AF LS+GVG+ NA+VFEIVMTFGLVY
Sbjct:  105 ILYWIAQLLGSVAACFLLSFATGGEPIPAFGLSAGVGSLNALVFEIVMTFGLVY 158          
BLAST of GE213392 vs. ExPASy Swiss-Prot
Match: TIP12_MAIZE (Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.234e-15
Identity = 38/54 (70.37%), Postives = 44/54 (81.48%), Query Frame = 3
Query:   30 ILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVY 191
            ++YW+AQLLGS VACLLLK  T G    AF+LS+GVGA NAVV E+VMTFGLVY
Sbjct:  104 LVYWVAQLLGSVVACLLLKIATGGAALGAFSLSAGVGAMNAVVLEMVMTFGLVY 157          
BLAST of GE213392 vs. ExPASy Swiss-Prot
Match: TIP11_MAIZE (Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.892e-14
Identity = 37/54 (68.52%), Postives = 42/54 (77.78%), Query Frame = 3
Query:   30 ILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVY 191
            +LYW+AQLLGSTVAC LL+F T GQ T  F L +GV  W A+V EIVMTFGLVY
Sbjct:  104 LLYWVAQLLGSTVACFLLRFSTGGQATGTFGL-TGVSVWEALVLEIVMTFGLVY 156          
BLAST of GE213392 vs. ExPASy Swiss-Prot
Match: TIP11_ORYSJ (Probable aquaporin TIP1-1 OS=Oryza sativa subsp. japonica GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.388e-14
Identity = 37/54 (68.52%), Postives = 41/54 (75.93%), Query Frame = 3
Query:   30 ILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVY 191
            +LYWIAQLLGSTVAC LL+F T G  T  F L +GV  W A+V EIVMTFGLVY
Sbjct:  104 LLYWIAQLLGSTVACFLLRFSTGGLATGTFGL-TGVSVWEALVLEIVMTFGLVY 156          
BLAST of GE213392 vs. ExPASy Swiss-Prot
Match: TIP31_ARATH (Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.659e-13
Identity = 34/55 (61.82%), Postives = 42/55 (76.36%), Query Frame = 3
Query:   30 ILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYL 194
            I YWIAQLLG+ +ACLLL+  TNG     F L+SGVGA N +V EI++TFGLVY+
Sbjct:  112 IYYWIAQLLGAILACLLLRLTTNGMRPVGFRLASGVGAVNGLVLEIILTFGLVYV 166          
BLAST of GE213392 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.770e-12
Identity = 32/54 (59.26%), Postives = 40/54 (74.07%), Query Frame = 3
Query:   30 ILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVY 191
            +LYW+AQLLG+  A LLL+  T G     FAL+SGVG W+AV+ E VMTFGL+Y
Sbjct:  108 VLYWVAQLLGAVAATLLLRLATGGMRPPGFALASGVGDWHAVLLEAVMTFGLMY 161          
BLAST of GE213392 vs. ExPASy Swiss-Prot
Match: TIP31_ORYSJ (Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.787e-12
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 3
Query:   30 ILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVY 191
            + YW+AQLLG+ VA LLL+  T G     FAL+SGVG W+AV+ E  MTFGL+Y
Sbjct:  109 LFYWLAQLLGAVVATLLLRLTTGGMRPPGFALASGVGDWHAVLLEATMTFGLMY 162          
The following BLAST results are available for this feature:
BLAST of GE213392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
TIP12_ORYSJ4.810e-1875.93Probable aquaporin TIP1-2 OS=Oryza sativa subsp. j... [more]
TIP13_ARATH9.072e-1777.78Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3... [more]
TIP11_ARATH3.447e-1675.93Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1... [more]
TIP12_ARATH1.711e-1572.22Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2... [more]
TIP12_MAIZE2.234e-1570.37Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1[more]
TIP11_MAIZE1.892e-1468.52Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1[more]
TIP11_ORYSJ9.388e-1468.52Probable aquaporin TIP1-1 OS=Oryza sativa subsp. j... [more]
TIP31_ARATH4.659e-1361.82Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1... [more]
TIP31_MAIZE1.770e-1259.26Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1[more]
TIP31_ORYSJ8.787e-1257.41Probable aquaporin TIP3-1 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank description262 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.