GE213388

Overview
NameGE213388
Unique NameGE213388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1491 contig Csv1_Contig1491:465..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213388 vs. ExPASy Swiss-Prot
Match: DOF52_ARATH (Dof zinc finger protein DOF5.2 OS=Arabidopsis thaliana GN=DOF5.2 PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 7.885e-29
Identity = 53/57 (92.98%), Postives = 54/57 (94.74%), Query Frame = -3
Query:   20 SQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVP 190
            SQE  LKKPDKILPCPRCNSM+TKFCYYNNYNVNQPRHFCK CQRYWTAGGTMRNVP
Sbjct:  126 SQEGKLKKPDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKKCQRYWTAGGTMRNVP 182          
BLAST of GE213388 vs. ExPASy Swiss-Prot
Match: DOF55_ARATH (Dof zinc finger protein DOF5.5 OS=Arabidopsis thaliana GN=DOF5.5 PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 3.313e-27
Identity = 49/58 (84.48%), Postives = 55/58 (94.83%), Query Frame = -3
Query:   20 TSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVP 193
            + ++KTLKKP KILPCPRCNSM+TKFCYYNNYNVNQPRHFCK CQRYWT+GGTMR+VP
Sbjct:   41 SEKDKTLKKPTKILPCPRCNSMETKFCYYNNYNVNQPRHFCKACQRYWTSGGTMRSVP 98          
BLAST of GE213388 vs. ExPASy Swiss-Prot
Match: DOF33_ARATH (Dof zinc finger protein DOF3.3 OS=Arabidopsis thaliana GN=DOF3.3 PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 4.327e-27
Identity = 50/58 (86.21%), Postives = 52/58 (89.66%), Query Frame = -3
Query:   20 TSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVP 193
            T   KTLKKP KILPCPRC SM+TKFCYYNNYN+NQPRHFCK CQRYWTAGGTMRNVP
Sbjct:   97 TPDGKTLKKPTKILPCPRCKSMETKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVP 154          
BLAST of GE213388 vs. ExPASy Swiss-Prot
Match: DOF13_ARATH (Dof zinc finger protein DOF1.3 OS=Arabidopsis thaliana GN=DOF1.3 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.784e-26
Identity = 50/60 (83.33%), Postives = 54/60 (90.00%), Query Frame = -3
Query:   20 TSQEKT--LKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVP 193
            + +EKT  LKKPDKILPCPRCNS DTKFCYYNNYNVNQPRHFC+ CQRYWTAGG+MR VP
Sbjct:   90 SEEEKTTELKKPDKILPCPRCNSADTKFCYYNNYNVNQPRHFCRKCQRYWTAGGSMRIVP 149          
BLAST of GE213388 vs. ExPASy Swiss-Prot
Match: DOF1A_ARATH (Dof zinc finger protein DOF1.10 OS=Arabidopsis thaliana GN=DOF1.10 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.374e-25
Identity = 48/60 (80.00%), Postives = 55/60 (91.67%), Query Frame = -3
Query:   20 TSQEKT--LKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVP 193
            TS EK+  LKKPDK++PCPRC S +TKFCYYNNYNVNQPR+FC+NCQRYWTAGG+MRNVP
Sbjct:  117 TSGEKSTALKKPDKLIPCPRCESANTKFCYYNNYNVNQPRYFCRNCQRYWTAGGSMRNVP 176          
BLAST of GE213388 vs. ExPASy Swiss-Prot
Match: DOF15_ARATH (Dof zinc finger protein DOF1.5 OS=Arabidopsis thaliana GN=DOF1.5 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.050e-25
Identity = 46/63 (73.02%), Postives = 53/63 (84.13%), Query Frame = -3
Query:   20 AARAGTSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVP 208
            A R+ +S     K+PDKI+PCPRC SM+TKFCY+NNYNVNQPRHFCK CQRYWTAGG +RNVP
Sbjct:   44 AVRSPSSDLTAEKRPDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVP 106          
BLAST of GE213388 vs. ExPASy Swiss-Prot
Match: DOF23_ARATH (Dof zinc finger protein DOF2.3 OS=Arabidopsis thaliana GN=DOF2.3 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 9.974e-24
Identity = 45/64 (70.31%), Postives = 53/64 (82.81%), Query Frame = -3
Query:   20 AARAGTSQEKTL-KKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVP 208
            A R+ +S + T  K+PDKI+ CPRC SM+TKFCY+NNYNVNQPRHFCK C RYWTAGG +RNVP
Sbjct:   39 AVRSSSSSDLTAEKRPDKIIACPRCKSMETKFCYFNNYNVNQPRHFCKGCHRYWTAGGALRNVP 102          
BLAST of GE213388 vs. ExPASy Swiss-Prot
Match: DOF54_ARATH (Dof zinc finger protein DOF5.4 OS=Arabidopsis thaliana GN=DOF5.4 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 8.738e-20
Identity = 36/45 (80.00%), Postives = 42/45 (93.33%), Query Frame = -3
Query:   20 LPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVP 154
            L CPRCNS++TKFCYYNNYN++QPRHFCKNC+RYWT GG +RNVP
Sbjct:   51 LKCPRCNSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVP 95          
BLAST of GE213388 vs. ExPASy Swiss-Prot
Match: DOF18_ARATH (Dof zinc finger protein DOF1.8 OS=Arabidopsis thaliana GN=DOF1.8 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.947e-19
Identity = 35/56 (62.50%), Postives = 48/56 (85.71%), Query Frame = -3
Query:   20 QEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVP 187
            + K   + D+ L CPRCNS++TKFCYYNNY++ QPR+FCK+C+RYWTAGG++RN+P
Sbjct:   38 ERKARPEKDQALNCPRCNSLNTKFCYYNNYSLTQPRYFCKDCRRYWTAGGSLRNIP 93          
BLAST of GE213388 vs. ExPASy Swiss-Prot
Match: MNB1A_MAIZE (Dof zinc finger protein MNB1A OS=Zea mays GN=MNB1A PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 2.542e-19
Identity = 36/44 (81.82%), Postives = 39/44 (88.64%), Query Frame = -3
Query:   20 PCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVP 151
            PCPRC S DTKFCYYNNYN +QPRHFCK C+RYWT GGT+RNVP
Sbjct:   48 PCPRCASRDTKFCYYNNYNTSQPRHFCKGCRRYWTKGGTLRNVP 91          
The following BLAST results are available for this feature:
BLAST of GE213388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
DOF52_ARATH7.885e-2992.98Dof zinc finger protein DOF5.2 OS=Arabidopsis thal... [more]
DOF55_ARATH3.313e-2784.48Dof zinc finger protein DOF5.5 OS=Arabidopsis thal... [more]
DOF33_ARATH4.327e-2786.21Dof zinc finger protein DOF3.3 OS=Arabidopsis thal... [more]
DOF13_ARATH4.784e-2683.33Dof zinc finger protein DOF1.3 OS=Arabidopsis thal... [more]
DOF1A_ARATH2.374e-2580.00Dof zinc finger protein DOF1.10 OS=Arabidopsis tha... [more]
DOF15_ARATH4.050e-2573.02Dof zinc finger protein DOF1.5 OS=Arabidopsis thal... [more]
DOF23_ARATH9.974e-2470.31Dof zinc finger protein DOF2.3 OS=Arabidopsis thal... [more]
DOF54_ARATH8.738e-2080.00Dof zinc finger protein DOF5.4 OS=Arabidopsis thal... [more]
DOF18_ARATH1.947e-1962.50Dof zinc finger protein DOF1.8 OS=Arabidopsis thal... [more]
MNB1A_MAIZE2.542e-1981.82Dof zinc finger protein MNB1A OS=Zea mays GN=MNB1A... [more]

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Properties
Property NameValue
Genbank description257 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.