GE213373

Overview
NameGE213373
Unique NameGE213373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213373 vs. ExPASy Swiss-Prot
Match: CYC3_ARATH (Probable cytochrome c At4g10040 OS=Arabidopsis thaliana GN=At4g10040 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.840e-26
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 1
Query:  391 MASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGY 555
            MASFDEAPPGN KAGEKIF+TKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGY
Sbjct:    1 MASFDEAPPGNPKAGEKIFRTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGY 55          
BLAST of GE213373 vs. ExPASy Swiss-Prot
Match: CYC_CUCMA (Cytochrome c OS=Cucurbita maxima PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.327e-26
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 1
Query:  394 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGY 555
            ASFDEAPPGN+KAGEKIFKTKCAQCHTV+KGAGHKQGPNLNGLFGRQSGTTPGY
Sbjct:    1 ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGY 54          
BLAST of GE213373 vs. ExPASy Swiss-Prot
Match: CYC_ORYSJ (Cytochrome c OS=Oryza sativa subsp. japonica GN=CC-1 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.409e-25
Identity = 52/55 (94.55%), Postives = 53/55 (96.36%), Query Frame = 1
Query:  391 MASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGY 555
            MASF EAPPGN KAGEKIFKTKCAQCHTV+KGAGHKQGPNLNGLFGRQSGTTPGY
Sbjct:    1 MASFSEAPPGNPKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGY 55          
BLAST of GE213373 vs. ExPASy Swiss-Prot
Match: CYC_ORYSI (Cytochrome c OS=Oryza sativa subsp. indica GN=CC-1 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.409e-25
Identity = 52/55 (94.55%), Postives = 53/55 (96.36%), Query Frame = 1
Query:  391 MASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGY 555
            MASF EAPPGN KAGEKIFKTKCAQCHTV+KGAGHKQGPNLNGLFGRQSGTTPGY
Sbjct:    1 MASFSEAPPGNPKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGY 55          
BLAST of GE213373 vs. ExPASy Swiss-Prot
Match: CYC_ABUTH (Cytochrome c OS=Abutilon theophrasti PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.409e-25
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 1
Query:  394 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGY 555
            ASF +APPG+AKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGY
Sbjct:    1 ASFQZAPPGBAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGY 54          
BLAST of GE213373 vs. ExPASy Swiss-Prot
Match: CYC2_ARATH (Probable cytochrome c At1g22840 OS=Arabidopsis thaliana GN=At1g22840 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.140e-25
Identity = 52/55 (94.55%), Postives = 53/55 (96.36%), Query Frame = 1
Query:  391 MASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGY 555
            MASFDEAPPGNAKAGEKIF+TKCAQCHTVE GAGHKQGPNLNGLFGRQSGTT GY
Sbjct:    1 MASFDEAPPGNAKAGEKIFRTKCAQCHTVEAGAGHKQGPNLNGLFGRQSGTTAGY 55          
BLAST of GE213373 vs. ExPASy Swiss-Prot
Match: CYC_BRAOL (Cytochrome c OS=Brassica oleracea PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.356e-25
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 1
Query:  394 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGY 555
            ASFDEAPPGN+KAGEKIFKTKCAQCHTV+KGAGHKQGPNLNGLFGRQSGTT GY
Sbjct:    1 ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGY 54          
BLAST of GE213373 vs. ExPASy Swiss-Prot
Match: CYC_BRANA (Cytochrome c OS=Brassica napus PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.356e-25
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 1
Query:  394 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGY 555
            ASFDEAPPGN+KAGEKIFKTKCAQCHTV+KGAGHKQGPNLNGLFGRQSGTT GY
Sbjct:    1 ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGY 54          
BLAST of GE213373 vs. ExPASy Swiss-Prot
Match: CYC_SESIN (Cytochrome c OS=Sesamum indicum PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.995e-25
Identity = 48/54 (88.89%), Postives = 53/54 (98.15%), Query Frame = 1
Query:  394 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGY 555
            ASF++APPG+ K+GEKIFKTKCAQCHTV+KGAGHKQGPNLNGLFGRQSGTTPGY
Sbjct:    1 ASFBZAPPGBVKSGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGY 54          
BLAST of GE213373 vs. ExPASy Swiss-Prot
Match: CYC_RICCO (Cytochrome c OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.193e-24
Identity = 49/54 (90.74%), Postives = 52/54 (96.30%), Query Frame = 1
Query:  394 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGY 555
            ASF++APPG+ KAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTT GY
Sbjct:    1 ASFBZAPPGBVKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTAGY 54          
The following BLAST results are available for this feature:
BLAST of GE213373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
CYC3_ARATH2.840e-2696.36Probable cytochrome c At4g10040 OS=Arabidopsis tha... [more]
CYC_CUCMA6.327e-2696.30Cytochrome c OS=Cucurbita maxima PE=1 SV=1[more]
CYC_ORYSJ1.409e-2594.55Cytochrome c OS=Oryza sativa subsp. japonica GN=CC... [more]
CYC_ORYSI1.409e-2594.55Cytochrome c OS=Oryza sativa subsp. indica GN=CC-1... [more]
CYC_ABUTH1.409e-2594.44Cytochrome c OS=Abutilon theophrasti PE=1 SV=1[more]
CYC2_ARATH3.140e-2594.55Probable cytochrome c At1g22840 OS=Arabidopsis tha... [more]
CYC_BRAOL5.356e-2594.44Cytochrome c OS=Brassica oleracea PE=1 SV=1[more]
CYC_BRANA5.356e-2594.44Cytochrome c OS=Brassica napus PE=1 SV=1[more]
CYC_SESIN6.995e-2588.89Cytochrome c OS=Sesamum indicum PE=1 SV=1[more]
CYC_RICCO1.193e-2490.74Cytochrome c OS=Ricinus communis PE=1 SV=1[more]

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Properties
Property NameValue
Genbank description241 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.