GE213370

Overview
NameGE213370
Unique NameGE213370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13710 contig Csv1_Contig13710:1..429. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213370 vs. ExPASy Swiss-Prot
Match: PSB1_PETHY (Proteasome subunit beta type-1 OS=Petunia hybrida GN=PBF1 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 6.730e-50
Identity = 93/106 (87.74%), Postives = 98/106 (92.45%), Query Frame = -1
Query:   13 MTKQHPAWSPYDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYLGR 330
            MTKQ   WSPYDNNGGTCVA+AGADYCVIAADTRMSTGY+ILTRDYSKI KLADKCVMASSGFQADV+ALQK+LA+RHLIYQHQHNKQMSCP M QLLSNTLY  R
Sbjct:    1 MTKQQANWSPYDNNGGTCVAVAGADYCVIAADTRMSTGYNILTRDYSKIIKLADKCVMASSGFQADVRALQKVLASRHLIYQHQHNKQMSCPAMGQLLSNTLYYKR 106          
BLAST of GE213370 vs. ExPASy Swiss-Prot
Match: PSB1_ARATH (Proteasome subunit beta type-1 OS=Arabidopsis thaliana GN=PBF1 PE=1 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 1.658e-48
Identity = 91/106 (85.85%), Postives = 98/106 (92.45%), Query Frame = -1
Query:   13 MTKQHPAWSPYDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYLGR 330
            MTKQH  WSPYDNNGGTCVAIAG+DYCVIAADTRMSTGYSIL+RDYSKI KLAD+ V++SSGFQADVKALQK+L +RHLIYQHQHNKQMSCP MAQLLSNTLY  R
Sbjct:    1 MTKQHANWSPYDNNGGTCVAIAGSDYCVIAADTRMSTGYSILSRDYSKIHKLADRAVLSSSGFQADVKALQKVLKSRHLIYQHQHNKQMSCPAMAQLLSNTLYFKR 106          
BLAST of GE213370 vs. ExPASy Swiss-Prot
Match: PSB1_ORYSJ (Proteasome subunit beta type-1 OS=Oryza sativa subsp. japonica GN=PBF1 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 3.348e-41
Identity = 77/96 (80.21%), Postives = 87/96 (90.62%), Query Frame = -1
Query:   13 YDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYLGR 300
            Y+NNGGTCVAIAGADYCV+AADTR+S GY+ILTRD+SKIC+LADKC +ASSGFQ D+KAL K LAAR L+YQHQHNK+MSCP MAQLLSNTLY  R
Sbjct:    9 YENNGGTCVAIAGADYCVVAADTRLSVGYNILTRDHSKICELADKCALASSGFQGDIKALHKNLAARELLYQHQHNKRMSCPAMAQLLSNTLYYKR 104          
BLAST of GE213370 vs. ExPASy Swiss-Prot
Match: PSB1_DICDI (Proteasome subunit beta type-1 OS=Dictyostelium discoideum GN=psmB1 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 8.284e-24
Identity = 57/103 (55.34%), Postives = 70/103 (67.96%), Query Frame = -1
Query:   13 HPAWSPYDNNGGTCVAIAGADYCVIAADTRMSTG-YSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYLGR 318
            H  +  Y +NGGT +A+AG DYCVIA DTRMS G Y I TR Y+KI +L  KCV+A+SG QAD  ALQK L +    ++ +H K MS P +AQ LSNTLY  R
Sbjct:   20 HGRFEAYVDNGGTVLAVAGKDYCVIAGDTRMSDGGYGIQTRKYTKIFQLTKKCVLATSGMQADTIALQKRLKSMLESFEKEHGKPMSTPAIAQFLSNTLYYKR 122          
BLAST of GE213370 vs. ExPASy Swiss-Prot
Match: PSB1_RAT (Proteasome subunit beta type-1 OS=Rattus norvegicus GN=Psmb1 PE=1 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 9.479e-20
Identity = 48/99 (48.48%), Postives = 65/99 (65.66%), Query Frame = -1
Query:   13 WSPYDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYLGR 309
            +SPY  NGGT +AIAG D+ ++A+DTR+S G+SI TRD  K  KL DK V+  SGF  D   L K++ AR  +Y+H +NK M+   +A +LS  LY  R
Sbjct:   29 FSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRR 127          
BLAST of GE213370 vs. ExPASy Swiss-Prot
Match: PSB1_MOUSE (Proteasome subunit beta type-1 OS=Mus musculus GN=Psmb1 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 9.479e-20
Identity = 48/99 (48.48%), Postives = 65/99 (65.66%), Query Frame = -1
Query:   13 WSPYDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYLGR 309
            +SPY  NGGT +AIAG D+ ++A+DTR+S G+SI TRD  K  KL DK V+  SGF  D   L K++ AR  +Y+H +NK M+   +A +LS  LY  R
Sbjct:   29 FSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRR 127          
BLAST of GE213370 vs. ExPASy Swiss-Prot
Match: PSB1_HUMAN (Proteasome subunit beta type-1 OS=Homo sapiens GN=PSMB1 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 9.479e-20
Identity = 48/99 (48.48%), Postives = 65/99 (65.66%), Query Frame = -1
Query:   13 WSPYDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYLGR 309
            +SPY  NGGT +AIAG D+ ++A+DTR+S G+SI TRD  K  KL DK V+  SGF  D   L K++ AR  +Y+H +NK M+   +A +LS  LY  R
Sbjct:   30 FSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRR 128          
BLAST of GE213370 vs. ExPASy Swiss-Prot
Match: PSB1_BOVIN (Proteasome subunit beta type-1 OS=Bos taurus GN=PSMB1 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 9.479e-20
Identity = 48/99 (48.48%), Postives = 65/99 (65.66%), Query Frame = -1
Query:   13 WSPYDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLYLGR 309
            +SPY  NGGT +AIAG D+ ++A+DTR+S G+SI TRD  K  KL DK V+  SGF  D   L K++ AR  +Y+H +NK M+   +A +LS  LY  R
Sbjct:   30 FSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRR 128          
BLAST of GE213370 vs. ExPASy Swiss-Prot
Match: PSB1_DROME (Proteasome subunit beta type-1 OS=Drosophila melanogaster GN=Pros26 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 2.758e-19
Identity = 46/100 (46.00%), Postives = 69/100 (69.00%), Query Frame = -1
Query:   22 QHPAWSPYDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLY 321
            +HP +SPY++NGG+ VAIAG D+ VIAADTR+S+GY+I +R  SK+ KL+ + V+ S+G  AD  +L   +  R   Y+H H + M+   +AQ+LS  +Y
Sbjct:   18 KHPDFSPYESNGGSIVAIAGDDFAVIAADTRLSSGYNIHSRTQSKLFKLSPQTVLGSAGCWADTLSLTGSIKVRMQSYEHTHLRTMTTEAVAQMLSIAMY 117          
BLAST of GE213370 vs. ExPASy Swiss-Prot
Match: PSB1B_CARAU (Proteasome subunit beta type-1-B OS=Carassius auratus GN=psmb1-B PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 8.024e-19
Identity = 45/96 (46.88%), Postives = 63/96 (65.62%), Query Frame = -1
Query:   22 WSPYDNNGGTCVAIAGADYCVIAADTRMSTGYSILTRDYSKICKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPGMAQLLSNTLY 309
            +SPY  NGGT +A+AG D+ ++A+DTR+S GYSI +RD  K  KL D  V+  SGF  D   L K++ AR  +Y+H +NK M+   +A +LS  LY
Sbjct:   26 FSPYAFNGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKSMTSGAIAAMLSTILY 121          
The following BLAST results are available for this feature:
BLAST of GE213370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
PSB1_PETHY6.730e-5087.74Proteasome subunit beta type-1 OS=Petunia hybrida ... [more]
PSB1_ARATH1.658e-4885.85Proteasome subunit beta type-1 OS=Arabidopsis thal... [more]
PSB1_ORYSJ3.348e-4180.21Proteasome subunit beta type-1 OS=Oryza sativa sub... [more]
PSB1_DICDI8.284e-2455.34Proteasome subunit beta type-1 OS=Dictyostelium di... [more]
PSB1_RAT9.479e-2048.48Proteasome subunit beta type-1 OS=Rattus norvegicu... [more]
PSB1_MOUSE9.479e-2048.48Proteasome subunit beta type-1 OS=Mus musculus GN=... [more]
PSB1_HUMAN9.479e-2048.48Proteasome subunit beta type-1 OS=Homo sapiens GN=... [more]
PSB1_BOVIN9.479e-2048.48Proteasome subunit beta type-1 OS=Bos taurus GN=PS... [more]
PSB1_DROME2.758e-1946.00Proteasome subunit beta type-1 OS=Drosophila melan... [more]
PSB1B_CARAU8.024e-1946.88Proteasome subunit beta type-1-B OS=Carassius aura... [more]

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Properties
Property NameValue
Genbank description238 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.