GE213366

Overview
NameGE213366
Unique NameGE213366
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6307 contig Csv1_Contig6307:497..1044. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213366 vs. ExPASy Swiss-Prot
Match: ADF2_ARATH (Actin-depolymerizing factor 2 OS=Arabidopsis thaliana GN=ADF2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.764e-11
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 3
Query:   18 ASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 125
            ASSKDRFKRELDGIQVELQATDP+EMGLDVFK R N
Sbjct:  102 ASSKDRFKRELDGIQVELQATDPTEMGLDVFKSRTN 137          
BLAST of GE213366 vs. ExPASy Swiss-Prot
Match: ADF3_ARATH (Actin-depolymerizing factor 3 OS=Arabidopsis thaliana GN=ADF3 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.929e-11
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 3
Query:   18 ASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 125
            ASSKDRFKRELDGIQVELQATDP+EM LDVFK RAN
Sbjct:  104 ASSKDRFKRELDGIQVELQATDPTEMDLDVFKSRAN 139          
BLAST of GE213366 vs. ExPASy Swiss-Prot
Match: ADF2_PETHY (Actin-depolymerizing factor 2 OS=Petunia hybrida GN=ADF2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.131e-11
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = 3
Query:   18 ASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN*IK 134
            ASSKDRFKRELDGIQVELQATDP+EMGLDVF+ RA  I+
Sbjct:  104 ASSKDRFKRELDGIQVELQATDPTEMGLDVFRSRAGGIE 142          
BLAST of GE213366 vs. ExPASy Swiss-Prot
Match: ADF1_ARATH (Actin-depolymerizing factor 1 OS=Arabidopsis thaliana GN=ADF1 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.753e-11
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 3
Query:   18 ASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 125
            ASSKDRFKRELDGIQVELQATDP+EM LDVF+ RAN
Sbjct:  104 ASSKDRFKRELDGIQVELQATDPTEMDLDVFRSRAN 139          
The following BLAST results are available for this feature:
BLAST of GE213366 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ADF2_ARATH1.764e-1191.67Actin-depolymerizing factor 2 OS=Arabidopsis thali... [more]
ADF3_ARATH3.929e-1191.67Actin-depolymerizing factor 3 OS=Arabidopsis thali... [more]
ADF2_PETHY5.131e-1184.62Actin-depolymerizing factor 2 OS=Petunia hybrida G... [more]
ADF1_ARATH8.753e-1188.89Actin-depolymerizing factor 1 OS=Arabidopsis thali... [more]
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Properties
Property NameValue
Genbank description234 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.