GE213365

Overview
NameGE213365
Unique NameGE213365
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1346 contig Csv1_Contig1346:84..548. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213365 vs. ExPASy Swiss-Prot
Match: CNOT1_XENTR (CCR4-NOT transcription complex subunit 1 OS=Xenopus tropicalis GN=cnot1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 4.822e-21
Identity = 45/63 (71.43%), Postives = 49/63 (77.78%), Query Frame = -1
Query:  277 LFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVDDSM 465
            L ERLIVNRPHPWGLLITFIELIKNP + FWN  F+ CAPEIEKLF+SVA+ C G K     M
Sbjct: 2320 LLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVM 2382          
BLAST of GE213365 vs. ExPASy Swiss-Prot
Match: CNOT1_MOUSE (CCR4-NOT transcription complex subunit 1 OS=Mus musculus GN=Cnot1 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 4.822e-21
Identity = 45/63 (71.43%), Postives = 49/63 (77.78%), Query Frame = -1
Query:  277 LFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVDDSM 465
            L ERLIVNRPHPWGLLITFIELIKNP + FWN  F+ CAPEIEKLF+SVA+ C G K     M
Sbjct: 2307 LLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVM 2369          
BLAST of GE213365 vs. ExPASy Swiss-Prot
Match: CNOT1_HUMAN (CCR4-NOT transcription complex subunit 1 OS=Homo sapiens GN=CNOT1 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 4.822e-21
Identity = 45/63 (71.43%), Postives = 49/63 (77.78%), Query Frame = -1
Query:  277 LFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVDDSM 465
            L ERLIVNRPHPWGLLITFIELIKNP + FWN  F+ CAPEIEKLF+SVA+ C G K     M
Sbjct: 2308 LLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVM 2370          
BLAST of GE213365 vs. ExPASy Swiss-Prot
Match: CNOT1_DANRE (CCR4-NOT transcription complex subunit 1 OS=Danio rerio GN=cnot1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.832e-20
Identity = 44/63 (69.84%), Postives = 49/63 (77.78%), Query Frame = -1
Query:  277 LFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVDDSM 465
            L ERLIVNRPHPWGLLITFIELIKNP + FW+  F+ CAPEIEKLF+SVA+ C G K     M
Sbjct: 2306 LLERLIVNRPHPWGLLITFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVM 2368          
BLAST of GE213365 vs. ExPASy Swiss-Prot
Match: NOT1_SCHPO (General negative regulator of transcription subunit 1 OS=Schizosaccharomyces pombe GN=not1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.555e-11
Identity = 30/49 (61.22%), Postives = 37/49 (75.51%), Query Frame = -1
Query:  319 LFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESV 465
            L ER+I NRPHPWGLLITF EL+KN  YNFW   +I+   EI +LF+S+
Sbjct: 2027 LLERIICNRPHPWGLLITFTELLKNEDYNFWKHPYIKRNDEICRLFDSL 2075          
The following BLAST results are available for this feature:
BLAST of GE213365 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CNOT1_XENTR4.822e-2171.43CCR4-NOT transcription complex subunit 1 OS=Xenopu... [more]
CNOT1_MOUSE4.822e-2171.43CCR4-NOT transcription complex subunit 1 OS=Mus mu... [more]
CNOT1_HUMAN4.822e-2171.43CCR4-NOT transcription complex subunit 1 OS=Homo s... [more]
CNOT1_DANRE1.832e-2069.84CCR4-NOT transcription complex subunit 1 OS=Danio ... [more]
NOT1_SCHPO1.555e-1161.22General negative regulator of transcription subuni... [more]
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Properties
Property NameValue
Genbank description232 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.