GE213360

Overview
NameGE213360
Unique NameGE213360
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13708 contig Csv1_Contig13708:1..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213360 vs. ExPASy Swiss-Prot
Match: TAF10_MOUSE (Transcription initiation factor TFIID subunit 10 OS=Mus musculus GN=Taf10 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.980e-19
Identity = 48/104 (46.15%), Postives = 66/104 (63.46%), Query Frame = -2
Query:  238 LTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVXXXXXXXXXXXRLILTMEDLSKALREYGVNVKHQEYF 549
            L +FL  L  YTPTIPD +  +YL ++GF+  D R+IRL+++A QKF++++A DALQ CK +  A             +  LTMEDL+ AL EYG+NVK   YF
Sbjct:  116 LVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCKMKGTA--SGSSRSKSKDRKYTLTMEDLTPALSEYGINVKKPHYF 217          
BLAST of GE213360 vs. ExPASy Swiss-Prot
Match: TAF10_HUMAN (Transcription initiation factor TFIID subunit 10 OS=Homo sapiens GN=TAF10 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.980e-19
Identity = 48/104 (46.15%), Postives = 66/104 (63.46%), Query Frame = -2
Query:  238 LTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVXXXXXXXXXXXRLILTMEDLSKALREYGVNVKHQEYF 549
            L +FL  L  YTPTIPD +  +YL ++GF+  D R+IRL+++A QKF++++A DALQ CK +  A             +  LTMEDL+ AL EYG+NVK   YF
Sbjct:  116 LVDFLMQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCKMKGTA--SGSSRSKSKDRKYTLTMEDLTPALSEYGINVKKPHYF 217          
BLAST of GE213360 vs. ExPASy Swiss-Prot
Match: TAFAB_DROME (Transcription initiation factor TFIID subunit 10b OS=Drosophila melanogaster GN=Taf10b PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.808e-16
Identity = 43/104 (41.35%), Postives = 62/104 (59.62%), Query Frame = -2
Query:  241 LTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQQCKAR-QAAVVXXXXXXXXXXXRLILTMEDLSKALREYGVNVKHQEY 549
            L++F+S L  YTP IPD +  HYL   GFQ  D R++RL+++A QK+++++  DALQ  KAR                 +  LTMEDL  AL +YG+NV+  +Y
Sbjct:   41 LSDFMSQLEDYTPLIPDAVTSHYLNMGGFQSDDKRIVRLISLAAQKYMSDIIDDALQHSKARTHMQTTNTPGGSKAKDRKFTLTMEDLQPALADYGINVRKVDY 144          
BLAST of GE213360 vs. ExPASy Swiss-Prot
Match: TAF10_SCHPO (Transcription initiation factor TFIID subunit 10 OS=Schizosaccharomyces pombe GN=taf10 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.770e-14
Identity = 44/125 (35.20%), Postives = 66/125 (52.80%), Query Frame = -2
Query:  238 DAALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQQCKARQ------------------AAVVXXXXXXXXXXXRLILTMEDLSKALREYGVNVKHQEYF 558
            D  L  FL+ +  Y+P IPD L+++YL+ SGF+C D RL +L+ +  QKF+++VA DA Q  K R                    A             + +LT++DLS AL EYG+N+K  ++F
Sbjct:   90 DKTLENFLAQMDDYSPLIPDVLLDYYLSLSGFKCVDPRLKKLLGLTAQKFISDVAQDAYQYSKIRTGSSNASSTTFGAQNFGAGGASGIGSSGRRGDRGKTVLTVDDLSAALNEYGINLKRPDFF 214          
BLAST of GE213360 vs. ExPASy Swiss-Prot
Match: TAF10_DROME (Transcription initiation factor TFIID subunit 10 OS=Drosophila melanogaster GN=Taf10 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.097e-13
Identity = 39/114 (34.21%), Postives = 63/114 (55.26%), Query Frame = -2
Query:  238 DDAALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQQCKARQAAV------VXXXXXXXXXXXRLILTMEDLSKALREYGVNVKHQEYF 561
            +++ + E +  L  Y+PTIPD L  H L  +GF   D +++RLV+V+ QKF++++A DALQ CK R   +                  +  L MEDL  AL ++G+ ++  +YF
Sbjct:   53 EESEMDELIKQLEDYSPTIPDALTMHILKTAGFCTVDPKIVRLVSVSAQKFISDIANDALQHCKTRTTNIQHSSGHSSSKDKKNPKDRKYTLAMEDLVPALADHGITMRKPQYF 166          
BLAST of GE213360 vs. ExPASy Swiss-Prot
Match: TAF10_YEAST (Transcription initiation factor TFIID subunit 10 OS=Saccharomyces cerevisiae GN=TAF10 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.861e-12
Identity = 41/135 (30.37%), Postives = 65/135 (48.15%), Query Frame = -2
Query:  238 DAALTEFLSSLMGYTPTIPDELVEHYLAKSGFQCPDVRLIRLVAVATQKFVAEVATDALQQCKARQAAVVXXXXXXXXXXXRL----------------------------ILTMEDLSKALREYGVNVKHQEYF 558
            D  L E L  +    P IPD ++++YL K+GF   DVR+ RL+A+ATQKFV+++A DA +  + R +  V           +L                            +LT+ DLS A+ EYG+N+   +++
Sbjct:   71 DKTLEEILEMMDSTPPIIPDAVIDYYLTKNGFNVADVRVKRLLALATQKFVSDIAKDAYEYSRIRSSVAVSNANNSQARARQLLQGQQQPGVQQISQQQHQQNEKTTASKVVLTVNDLSSAVAEYGLNIGRPDFY 205          
The following BLAST results are available for this feature:
BLAST of GE213360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
TAF10_MOUSE2.980e-1946.15Transcription initiation factor TFIID subunit 10 O... [more]
TAF10_HUMAN2.980e-1946.15Transcription initiation factor TFIID subunit 10 O... [more]
TAFAB_DROME1.808e-1641.35Transcription initiation factor TFIID subunit 10b ... [more]
TAF10_SCHPO3.770e-1435.20Transcription initiation factor TFIID subunit 10 O... [more]
TAF10_DROME1.097e-1334.21Transcription initiation factor TFIID subunit 10 O... [more]
TAF10_YEAST7.861e-1230.37Transcription initiation factor TFIID subunit 10 O... [more]
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Properties
Property NameValue
Genbank description226 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.