GE213359

Overview
NameGE213359
Unique NameGE213359
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1550 contig Csv1_Contig1550:962..1294. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213359 vs. ExPASy Swiss-Prot
Match: DCE_SOLLC (Glutamate decarboxylase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 7.444e-43
Identity = 79/101 (78.22%), Postives = 90/101 (89.11%), Query Frame = 2
Query:   20 RYGLVYAGVGWVVWRTKYDLPDELVFHIDYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALI*GLQKTGRFEILSKDVGVPARA 322
            +YGLVYAGVGWV+WR+K DLPDELVFHI+YLGSDQPTFTLNFSKGS QIIAQYYQ IRLGFEGYKN+M+NC+ NA+ L  G+ K GRF+I+SKDVGVP  A
Sbjct:  278 KYGLVYAGVGWVIWRSKEDLPDELVFHINYLGSDQPTFTLNFSKGSYQIIAQYYQLIRLGFEGYKNVMKNCLSNAKVLTEGITKMGRFDIVSKDVGVPVVA 378          
BLAST of GE213359 vs. ExPASy Swiss-Prot
Match: DCE_PETHY (Glutamate decarboxylase OS=Petunia hybrida GN=GAD PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 2.829e-42
Identity = 76/98 (77.55%), Postives = 88/98 (89.80%), Query Frame = 2
Query:   20 RYGLVYAGVGWVVWRTKYDLPDELVFHIDYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALI*GLQKTGRFEILSKDVGVP 313
            +YGLVYAG+GWVVWR K DLPDEL+FHI+YLG+DQPTFTLNFSKGSSQ+IAQYYQ IRLG+EGYKN+MENC  NA  L  GL+KTGRF I+SK++GVP
Sbjct:  277 KYGLVYAGIGWVVWRNKDDLPDELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYKNVMENCQENASVLREGLEKTGRFNIISKEIGVP 374          
BLAST of GE213359 vs. ExPASy Swiss-Prot
Match: DCE2_ARATH (Glutamate decarboxylase 2 OS=Arabidopsis thaliana GN=GAD2 PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.006e-39
Identity = 75/101 (74.26%), Postives = 86/101 (85.15%), Query Frame = 2
Query:   20 RYGLVYAGVGWVVWRTKYDLPDELVFHIDYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALI*GLQKTGRFEILSKDVGVPARA 322
            +YGLVYAG+GWVVWR   DLP+EL+FHI+YLG+DQPTFTLNFSKGSSQIIAQYYQ IRLGFEGYKN+MENC+ N   L  G++KT RF I+SKD GVP  A
Sbjct:  276 KYGLVYAGIGWVVWRAAEDLPEELIFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGFEGYKNVMENCIENMVVLKEGIEKTERFNIVSKDQGVPVVA 376          
BLAST of GE213359 vs. ExPASy Swiss-Prot
Match: DCE1_ARATH (Glutamate decarboxylase 1 OS=Arabidopsis thaliana GN=GAD1 PE=1 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 6.521e-39
Identity = 72/98 (73.47%), Postives = 84/98 (85.71%), Query Frame = 2
Query:   20 RYGLVYAGVGWVVWRTKYDLPDELVFHIDYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALI*GLQKTGRFEILSKDVGVP 313
            +YGLVYAG+GWV+WR K DLP+EL+FHI+YLG+DQPTFTLNFSKGSSQ+IAQYYQ IRLG EGY+N+MENC  N   L  GL+KT RF I+SKD GVP
Sbjct:  277 KYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVP 374          
BLAST of GE213359 vs. ExPASy Swiss-Prot
Match: DCE_LACLM (Glutamate decarboxylase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=gadB PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 7.739e-24
Identity = 50/98 (51.02%), Postives = 66/98 (67.35%), Query Frame = 2
Query:   20 RYGLVYAGVGWVVWRTKYDLPDELVFHIDYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALI*GLQKTGRFEILSKDVGVP 313
            +YGLVY GVGWV+WR K  LP+EL+F + YLG + PT  +NFS  +SQ+I QYY F+R GF+GYK I E     A  L   ++KTG FEI++    +P
Sbjct:  277 KYGLVYPGVGWVLWRDKKYLPEELIFKVSYLGGELPTMAINFSHSASQLIGQYYNFVRYGFDGYKAIHERTHKVAMYLAEEIEKTGMFEIMNDGAQLP 374          
BLAST of GE213359 vs. ExPASy Swiss-Prot
Match: DCE_LACLA (Glutamate decarboxylase OS=Lactococcus lactis subsp. lactis GN=gadB PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.320e-23
Identity = 50/98 (51.02%), Postives = 66/98 (67.35%), Query Frame = 2
Query:   20 RYGLVYAGVGWVVWRTKYDLPDELVFHIDYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALI*GLQKTGRFEILSKDVGVP 313
            +YGLVY GVGWV+WR K  LP+EL+F + YLG + PT  +NFS  +SQ+I QYY F+R GF+GYK I E     A  L   ++KTG FEI++    +P
Sbjct:  277 KYGLVYPGVGWVLWRDKKYLPEELIFKVSYLGGELPTMAINFSHSASQLIGQYYNFVRYGFDGYKAIHERTHKVAMFLAKEIEKTGMFEIMNDGSQLP 374          
BLAST of GE213359 vs. ExPASy Swiss-Prot
Match: DCEC_LISMO (Probable glutamate decarboxylase gamma OS=Listeria monocytogenes GN=lmo2434 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.320e-23
Identity = 48/98 (48.98%), Postives = 65/98 (66.33%), Query Frame = 2
Query:   20 RYGLVYAGVGWVVWRTKYDLPDELVFHIDYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALI*GLQKTGRFEILSKDVGVP 313
            +YGLVY GVGW++W+ K  LP EL+F + YLG   PT  +NFS+ +SQII QYY F+R GFEGY+ I E     A  L   ++K+G FEI++    +P
Sbjct:  278 KYGLVYPGVGWILWKDKEYLPKELIFEVSYLGGSMPTMAINFSRSASQIIGQYYNFLRYGFEGYREIHEKTKKTAIYLAKTVEKSGYFEIINDGANLP 375          
BLAST of GE213359 vs. ExPASy Swiss-Prot
Match: DCEC_LISIN (Probable glutamate decarboxylase gamma OS=Listeria innocua GN=lin2528 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.252e-23
Identity = 48/98 (48.98%), Postives = 65/98 (66.33%), Query Frame = 2
Query:   20 RYGLVYAGVGWVVWRTKYDLPDELVFHIDYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALI*GLQKTGRFEILSKDVGVP 313
            +YGLVY GVGW++W+ K  LP EL+F + YLG   PT  +NFS+ +SQII QYY F+R GFEGY+ I E     A  L   ++K+G FEI++    +P
Sbjct:  278 KYGLVYPGVGWILWKDKEYLPKELIFEVSYLGGSMPTMAINFSRSASQIIGQYYNFLRYGFEGYREIHEKTKKTALYLSKTVEKSGYFEIINDGSNLP 375          
BLAST of GE213359 vs. ExPASy Swiss-Prot
Match: DCEA_LISMO (Glutamate decarboxylase alpha OS=Listeria monocytogenes GN=gadA PE=3 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 6.552e-23
Identity = 48/98 (48.98%), Postives = 63/98 (64.29%), Query Frame = 2
Query:   20 RYGLVYAGVGWVVWRTKYDLPDELVFHIDYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALI*GLQKTGRFEILSKDVGVP 313
            +YGLVY GVGW++WR K  LP+ELVF + YLG   PT  +NFS+ +SQII QYY F+R G+EGY+ I       A  L   + +TG FEI +    +P
Sbjct:  273 KYGLVYPGVGWILWRDKEYLPEELVFDVSYLGGHMPTMAINFSRSASQIIGQYYNFLRFGYEGYRQIHMRTRDGALQLSQAVAETGLFEIYNDGANLP 370          
BLAST of GE213359 vs. ExPASy Swiss-Prot
Match: DCEB_LISMO (Glutamate decarboxylase beta OS=Listeria monocytogenes GN=gadB PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 5.546e-22
Identity = 44/98 (44.90%), Postives = 66/98 (67.35%), Query Frame = 2
Query:   20 RYGLVYAGVGWVVWRTKYDLPDELVFHIDYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALI*GLQKTGRFEILSKDVGVP 313
            +YGLVY G+GWV+W+ +  LP+EL+F + YLG + PT  +NFS+ +S II QYY F+R GFEGY+ I +     A+ L   +++TG F+I +    +P
Sbjct:  275 KYGLVYPGIGWVLWKDESYLPEELIFKVSYLGGEMPTMQINFSRSASHIIGQYYNFLRYGFEGYRTIHQKTSDVAQYLAHAVEQTGYFDIFNDGSHLP 372          
The following BLAST results are available for this feature:
BLAST of GE213359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
DCE_SOLLC7.444e-4378.22Glutamate decarboxylase OS=Solanum lycopersicum PE... [more]
DCE_PETHY2.829e-4277.55Glutamate decarboxylase OS=Petunia hybrida GN=GAD ... [more]
DCE2_ARATH1.006e-3974.26Glutamate decarboxylase 2 OS=Arabidopsis thaliana ... [more]
DCE1_ARATH6.521e-3973.47Glutamate decarboxylase 1 OS=Arabidopsis thaliana ... [more]
DCE_LACLM7.739e-2451.02Glutamate decarboxylase OS=Lactococcus lactis subs... [more]
DCE_LACLA1.320e-2351.02Glutamate decarboxylase OS=Lactococcus lactis subs... [more]
DCEC_LISMO1.320e-2348.98Probable glutamate decarboxylase gamma OS=Listeria... [more]
DCEC_LISIN2.252e-2348.98Probable glutamate decarboxylase gamma OS=Listeria... [more]
DCEA_LISMO6.552e-2348.98Glutamate decarboxylase alpha OS=Listeria monocyto... [more]
DCEB_LISMO5.546e-2244.90Glutamate decarboxylase beta OS=Listeria monocytog... [more]

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Properties
Property NameValue
Genbank description225 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.