GE213351

Overview
NameGE213351
Unique NameGE213351
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213351 vs. ExPASy Swiss-Prot
Match: SYM1_YARLI (Protein SYM1 OS=Yarrowia lipolytica GN=SYM1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.673e-13
Identity = 37/94 (39.36%), Postives = 53/94 (56.38%), Query Frame = 2
Query:  134 VPAKVAFDQTAWAAAWNSIYYMVLGLLRLESPFSIFSELKATFWPMLTAGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVTILSTYSNEKSE 415
            V AKVA DQ  +A +    Y+ V+GLL  +SP +I+  LK  +W  L  GW +WP   L  +G+VP   R+L  +C  L+W T L+  +  K E
Sbjct:   73 VIAKVAIDQAVFAPSSIGYYFSVMGLLEGKSPDTIWQSLKNQYWDTLKCGWMIWPAFQLFNFGIVPPNFRVLASNCCGLVWNTFLAYQNANKME 166          
BLAST of GE213351 vs. ExPASy Swiss-Prot
Match: PXMP2_BOVIN (Peroxisomal membrane protein 2 OS=Bos taurus GN=PXMP2 PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 5.713e-11
Identity = 30/119 (25.21%), Postives = 60/119 (50.42%), Query Frame = 2
Query:   38 RSGLVGFTLHGSLSHYYYQFCEELFPFQDWWVVPAKVAFDQTAWAAAWNSIYYMVLGLLRLESPFSIFSELKATFWPMLTAGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVTILST 394
            R  + GF   G L H++Y   E   P +       ++  D+  +A A+ S++++V+  L  +   +  +++K+ FWP L   W++W     +    +PV+ R+L+ + V L W   L++
Sbjct:   75 RYAIYGFFFTGPLGHFFYLLMERWIPSEVPLAGIKRLLLDRLLFAPAFLSLFFLVMNFLEGQDTAAFAAKMKSGFWPALRMNWRVWTPVQFININYIPVQFRVLFANLVALFWYAYLAS 193          
BLAST of GE213351 vs. ExPASy Swiss-Prot
Match: SYM1_ASHGO (Protein SYM1 OS=Ashbya gossypii GN=SYM1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.461e-11
Identity = 43/134 (32.09%), Postives = 62/134 (46.27%), Query Frame = 2
Query:   29 RMFRSGLVGFTLHGSLSHYYYQFCEEL----FPFQDWWVVPAKVAFDQTAWAAAWNSIYYMVLGLLRLESPFSIFSELKATFWPMLTAGWKLWPFAHLVTYGLVPVEQRLLWVDCVELIWVTILSTYSNEKSEA 418
            R  R  L G  L   +   +Y+F   +     P   W  V A+VA DQ  +A     +YY  + L+   S   +   L   +W  L A W +WP   L  + LVPV+ RLL V+ + + W T LS YSN  + +
Sbjct:   50 RTLRPFLYGAVLFSLVGDKWYRFLSTVRLGRLPQAHWANVLARVACDQLIFAPIGVPLYYTAMALMEGGSLEDVRIRLSEKWWSTLLANWIVWPAFQLCNFSLVPVQHRLLTVNVLSIFWNTYLS-YSNSTASS 182          
The following BLAST results are available for this feature:
BLAST of GE213351 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SYM1_YARLI4.673e-1339.36Protein SYM1 OS=Yarrowia lipolytica GN=SYM1 PE=3 S... [more]
PXMP2_BOVIN5.713e-1125.21Peroxisomal membrane protein 2 OS=Bos taurus GN=PX... [more]
SYM1_ASHGO7.461e-1132.09Protein SYM1 OS=Ashbya gossypii GN=SYM1 PE=3 SV=1[more]
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Properties
Property NameValue
Genbank description215 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.