GE213350

Overview
NameGE213350
Unique NameGE213350
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2815 contig Csv1_Contig2815:47..679. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213350 vs. ExPASy Swiss-Prot
Match: ALFC3_ARATH (Probable fructose-bisphosphate aldolase 3, chloroplastic OS=Arabidopsis thaliana GN=FBA3 PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.359e-43
Identity = 83/95 (87.37%), Postives = 92/95 (96.84%), Query Frame = -3
Query:  311 GIMFLSGGQSEVEATLNLNAMNQAPNPWHVSFSYARALQNTVLKTWQGRPENTEAAQKSLLVRAKANSLAQLGKYSAEGESEEAKKGMFVRGYTY 595
            GIMFLSGGQSE EATLNLNAMNQ+PNPWHVSFSYARALQN+VL+TWQG+PE  EA+QK+LLVRAKANSLAQLGKYSAEGE+E+AKKGMFV+GYTY
Sbjct:  297 GIMFLSGGQSEAEATLNLNAMNQSPNPWHVSFSYARALQNSVLRTWQGKPEKIEASQKALLVRAKANSLAQLGKYSAEGENEDAKKGMFVKGYTY 391          
BLAST of GE213350 vs. ExPASy Swiss-Prot
Match: ALFC2_ARATH (Probable fructose-bisphosphate aldolase 2, chloroplastic OS=Arabidopsis thaliana GN=FBA2 PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 8.963e-43
Identity = 84/95 (88.42%), Postives = 88/95 (92.63%), Query Frame = -3
Query:  311 GIMFLSGGQSEVEATLNLNAMNQAPNPWHVSFSYARALQNTVLKTWQGRPENTEAAQKSLLVRAKANSLAQLGKYSAEGESEEAKKGMFVRGYTY 595
            GIMFLSGGQSEVEATLNLNAMNQAPNPWHVSFSYARALQNT LKTW GRPEN  AAQ +LL RAKANSLAQLGKY+ EGESEEAK+GMFV+GYTY
Sbjct:  304 GIMFLSGGQSEVEATLNLNAMNQAPNPWHVSFSYARALQNTCLKTWGGRPENVNAAQTTLLARAKANSLAQLGKYTGEGESEEAKEGMFVKGYTY 398          
BLAST of GE213350 vs. ExPASy Swiss-Prot
Match: ALFC1_ARATH (Probable fructose-bisphosphate aldolase 1, chloroplastic OS=Arabidopsis thaliana GN=FBA1 PE=1 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 6.423e-41
Identity = 81/95 (85.26%), Postives = 87/95 (91.58%), Query Frame = -3
Query:  311 GIMFLSGGQSEVEATLNLNAMNQAPNPWHVSFSYARALQNTVLKTWQGRPENTEAAQKSLLVRAKANSLAQLGKYSAEGESEEAKKGMFVRGYTY 595
            GIMFLSGGQSE+EATLNLNAMNQAPNPWHVSFSYARALQNT LKTW G+ EN +AAQ  LL RAKANSLAQLGKY+ EGESEEAK+GMFV+GYTY
Sbjct:  305 GIMFLSGGQSELEATLNLNAMNQAPNPWHVSFSYARALQNTCLKTWGGKEENVKAAQDILLARAKANSLAQLGKYTGEGESEEAKEGMFVKGYTY 399          
BLAST of GE213350 vs. ExPASy Swiss-Prot
Match: ALFC1_PEA (Fructose-bisphosphate aldolase 1, chloroplastic (Fragment) OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.525e-39
Identity = 77/95 (81.05%), Postives = 87/95 (91.58%), Query Frame = -3
Query:  311 GIMFLSGGQSEVEATLNLNAMNQAPNPWHVSFSYARALQNTVLKTWQGRPENTEAAQKSLLVRAKANSLAQLGKYSAEGESEEAKKGMFVRGYTY 595
            GIMFLSGGQSEVEATLNLNAMN++PNPWHVSFSYARALQNT LKTW G PEN +AAQ++LL RAK+NSLAQLGKY  +GESEEAKK +FV+GY+Y
Sbjct:  262 GIMFLSGGQSEVEATLNLNAMNKSPNPWHVSFSYARALQNTALKTWGGLPENVKAAQEALLFRAKSNSLAQLGKYYGDGESEEAKKELFVKGYSY 356          
BLAST of GE213350 vs. ExPASy Swiss-Prot
Match: ALFC_ORYSJ (Fructose-bisphosphate aldolase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os11g0171300 PE=1 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 7.852e-39
Identity = 76/95 (80.00%), Postives = 86/95 (90.53%), Query Frame = -3
Query:  311 GIMFLSGGQSEVEATLNLNAMNQAPNPWHVSFSYARALQNTVLKTWQGRPENTEAAQKSLLVRAKANSLAQLGKYSAEGESEEAKKGMFVRGYTY 595
            GIMFLSGGQSEVEAT NLNAMNQ PNPWHVSFSYARALQNT LKTW G+PEN +AAQ +LL+RAKANSLAQLGKY+++GE+ EAK+GMFV+ Y Y
Sbjct:  294 GIMFLSGGQSEVEATQNLNAMNQGPNPWHVSFSYARALQNTCLKTWGGQPENVKAAQDALLLRAKANSLAQLGKYTSDGEAAEAKEGMFVKNYVY 388          
BLAST of GE213350 vs. ExPASy Swiss-Prot
Match: ALFC2_PEA (Fructose-bisphosphate aldolase 2, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 3.647e-36
Identity = 75/95 (78.95%), Postives = 84/95 (88.42%), Query Frame = -3
Query:  311 GIMFLSGGQSEVEATLNLNAMNQAPNPWHVSFSYARALQNTVLKTWQGRPENTEAAQKSLLVRAKANSLAQLGKYSAEGESEEAKKGMFVRGYTY 595
            GIMFLSGGQSEVEATLNLNAMN++PNPWHVSFSYARALQNT LKTW G PEN +AAQ++LL RAK+NSLAQLGKY  +GESEEAKK    +GY+Y
Sbjct:  256 GIMFLSGGQSEVEATLNLNAMNKSPNPWHVSFSYARALQNTALKTWGGLPENVKAAQEALLFRAKSNSLAQLGKYIGDGESEEAKKDC-CQGYSY 349          
BLAST of GE213350 vs. ExPASy Swiss-Prot
Match: ALFC_SPIOL (Fructose-bisphosphate aldolase, chloroplastic OS=Spinacia oleracea PE=1 SV=3)

HSP 1 Score: 131.724 bits (330), Expect = 2.991e-30
Identity = 68/91 (74.73%), Postives = 73/91 (80.22%), Query Frame = -3
Query:  323 GIMFLSGGQSEVEATLNLNAMNQAPNPWHVSFSYARALQNTVLKTWQGRPENTEAAQKSLLVRAKANSLAQLGKYSAEGESEEAKKGMFVR 595
            GIM LSGGQSEVEATLNLNAMNQ+PNPWHVSFSYARALQNT LKTW    EN +A        AK+NSLAQLGKY+ EGESEE KK MFV+
Sbjct:  302 GIMVLSGGQSEVEATLNLNAMNQSPNPWHVSFSYARALQNTCLKTWVEGQENVKAQD---FACAKSNSLAQLGKYTGEGESEERKKDMFVK 389          
BLAST of GE213350 vs. ExPASy Swiss-Prot
Match: ALFC_CHLRE (Fructose-bisphosphate aldolase 1, chloroplastic OS=Chlamydomonas reinhardtii GN=ALDCHL PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.799e-28
Identity = 63/95 (66.32%), Postives = 73/95 (76.84%), Query Frame = -3
Query:  311 GIMFLSGGQSEVEATLNLNAMNQAPNPWHVSFSYARALQNTVLKTWQGRPENTEAAQKSLLVRAKANSLAQLGKYSAEGESEEAKKGMFVRGYTY 595
            GIMFLSGGQSE+E+TLNLNAMNQ+PNPWHVSFSYARAL NTVLKTWQ  P   +A + +   R KANS AQ GKY A  E +EA +GM+ +G  Y
Sbjct:  279 GIMFLSGGQSELESTLNLNAMNQSPNPWHVSFSYARALTNTVLKTWQASPRTVQAPRLAAQAR-KANSDAQQGKYDATTEGKEAAQGMYEKGKGY 372          
BLAST of GE213350 vs. ExPASy Swiss-Prot
Match: ALF_DICDI (Fructose-bisphosphate aldolase OS=Dictyostelium discoideum GN=fba PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.897e-25
Identity = 56/96 (58.33%), Postives = 71/96 (73.96%), Query Frame = -3
Query:  311 GIMFLSGGQSEVEATLNLNAMNQAPN-PWHVSFSYARALQNTVLKTWQGRPENTEAAQKSLLVRAKANSLAQLGKYSAEGESEEAKKGMFVRGYTY 595
            G++FLSGGQ+E+EAT NLNAMN  PN PW +SFSY RALQ +V+ TW+G   N EAA+K  L RAK NSLAQLGKY+ E  +  A + ++V+ Y Y
Sbjct:  262 GVVFLSGGQTEIEATANLNAMNVLPNRPWALSFSYGRALQASVISTWKGESANVEAARKVYLHRAKCNSLAQLGKYTGEESTGSASESLYVKDYKY 357          
BLAST of GE213350 vs. ExPASy Swiss-Prot
Match: ALF_SPIOL (Fructose-bisphosphate aldolase, cytoplasmic isozyme OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.889e-23
Identity = 54/97 (55.67%), Postives = 64/97 (65.98%), Query Frame = -3
Query:  311 GIMFLSGGQSEVEATLNLNAMN--QAPNPWHVSFSYARALQNTVLKTWQGRPENTEAAQKSLLVRAKANSLAQLGKYSAEGESEEAKKGMFVRGYTY 595
            G+MFLSGGQSE EATLNLNAMN  +   PW +SFSY RALQ + LK WQG+ EN   AQ+  L RAK NS A LGKY       +A + + V+ Y Y
Sbjct:  261 GVMFLSGGQSEEEATLNLNAMNKLETKKPWTLSFSYGRALQQSTLKAWQGKEENVAKAQEVFLARAKGNSEATLGKYQGGAGGADASESLHVKDYKY 357          
The following BLAST results are available for this feature:
BLAST of GE213350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ALFC3_ARATH2.359e-4387.37Probable fructose-bisphosphate aldolase 3, chlorop... [more]
ALFC2_ARATH8.963e-4388.42Probable fructose-bisphosphate aldolase 2, chlorop... [more]
ALFC1_ARATH6.423e-4185.26Probable fructose-bisphosphate aldolase 1, chlorop... [more]
ALFC1_PEA3.525e-3981.05Fructose-bisphosphate aldolase 1, chloroplastic (F... [more]
ALFC_ORYSJ7.852e-3980.00Fructose-bisphosphate aldolase, chloroplastic OS=O... [more]
ALFC2_PEA3.647e-3678.95Fructose-bisphosphate aldolase 2, chloroplastic OS... [more]
ALFC_SPIOL2.991e-3074.73Fructose-bisphosphate aldolase, chloroplastic OS=S... [more]
ALFC_CHLRE2.799e-2866.32Fructose-bisphosphate aldolase 1, chloroplastic OS... [more]
ALF_DICDI2.897e-2558.33Fructose-bisphosphate aldolase OS=Dictyostelium di... [more]
ALF_SPIOL7.889e-2355.67Fructose-bisphosphate aldolase, cytoplasmic isozym... [more]

Pages

back to top
Properties
Property NameValue
Genbank description214 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.