GE213344

Overview
NameGE213344
Unique NameGE213344
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4042 contig Csv1_Contig4042:1317..1714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213344 vs. ExPASy Swiss-Prot
Match: SUS2_PEA (Sucrose synthase 2 OS=Pisum sativum GN=SUS2 PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 1.126e-59
Identity = 102/119 (85.71%), Postives = 112/119 (94.12%), Query Frame = 2
Query:   20 RYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERY 376
            +Y L+G+FRWI AQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFAT HGGPAEIIEHG SGFHIDPYHPDQA+EL+ DFF +CKE+P+HW K+SDGGL+RIYERY
Sbjct:  637 QYNLNGEFRWITAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATNHGGPAEIIEHGVSGFHIDPYHPDQASELLVDFFQRCKEDPNHWNKVSDGGLQRIYERY 755          
BLAST of GE213344 vs. ExPASy Swiss-Prot
Match: SUS2_ARATH (Sucrose synthase 2 OS=Arabidopsis thaliana GN=At5g49190 PE=2 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 6.393e-55
Identity = 96/119 (80.67%), Postives = 103/119 (86.55%), Query Frame = 2
Query:   20 RYKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERY 376
            +Y L G+FRWIAAQ NRARNGELYRYIADTKG FVQPAFYEAFGLTVVE+MTC LPTFATCHGGPAEIIE+G SGFHIDPYHPDQ A  +  FF  C  NP+HW KIS+GGLKRIYERY
Sbjct:  631 QYDLHGEFRWIAAQMNRARNGELYRYIADTKGVFVQPAFYEAFGLTVVESMTCALPTFATCHGGPAEIIENGVSGFHIDPYHPDQVAATLVSFFETCNTNPNHWVKISEGGLKRIYERY 749          
BLAST of GE213344 vs. ExPASy Swiss-Prot
Match: SUS1_TULGE (Sucrose synthase 1 OS=Tulipa gesneriana PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 6.393e-55
Identity = 95/118 (80.51%), Postives = 105/118 (88.98%), Query Frame = 2
Query:   23 YKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERY 376
            YKL G  RWI+AQ NR RNGELYRYIADTKGAFVQPAFYEAFGLTVVE+MTCGLPTFATCHGGPAEII HG SGFHIDPYH D+A+E +  FF KCKE+P+HW+KIS GGL+RIYE+Y
Sbjct:  633 YKLQGHIRWISAQMNRVRNGELYRYIADTKGAFVQPAFYEAFGLTVVESMTCGLPTFATCHGGPAEIIVHGVSGFHIDPYHGDKASEQLVSFFEKCKEDPAHWEKISQGGLQRIYEKY 750          
BLAST of GE213344 vs. ExPASy Swiss-Prot
Match: SUSY_SOLLC (Sucrose synthase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 5.412e-54
Identity = 96/118 (81.36%), Postives = 106/118 (89.83%), Query Frame = 2
Query:   23 YKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERY 376
            + L+GQFRWI++Q NR RNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFAT HGGPAEII HG SGFHIDPYH +QAA+L+ADFF KCK+ PSHW+ IS GGLKRI E+Y
Sbjct:  634 HNLNGQFRWISSQMNRVRNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATNHGGPAEIIVHGKSGFHIDPYHGEQAADLLADFFEKCKKEPSHWETISTGGLKRIQEKY 751          
BLAST of GE213344 vs. ExPASy Swiss-Prot
Match: SUS1_SOLTU (Sucrose synthase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 9.232e-54
Identity = 96/118 (81.36%), Postives = 107/118 (90.68%), Query Frame = 2
Query:   23 YKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERY 376
            + L+GQFRWI++Q NR RNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFAT HGGPAEII HG SGFHIDPYH +QAA+L+ADFF KCK++PSHW+ IS GGLKRI E+Y
Sbjct:  634 HNLNGQFRWISSQMNRVRNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATNHGGPAEIIVHGKSGFHIDPYHGEQAADLLADFFEKCKKDPSHWETISMGGLKRIEEKY 751          
BLAST of GE213344 vs. ExPASy Swiss-Prot
Match: SUS1_ARATH (Sucrose synthase 1 OS=Arabidopsis thaliana GN=SUS1 PE=2 SV=3)

HSP 1 Score: 207.994 bits (528), Expect = 1.206e-53
Identity = 95/118 (80.51%), Postives = 105/118 (88.98%), Query Frame = 2
Query:   23 YKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERY 376
            YKL+GQFRWI++Q +R RNGELYRYI DTKGAFVQPA YEAFGLTVVEAMTCGLPTFATC GGPAEII HG SGFHIDPYH DQAA+ +ADFF KCKE+PSHW +IS GGL+RI E+Y
Sbjct:  636 YKLNGQFRWISSQMDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQAADTLADFFTKCKEDPSHWDEISKGGLQRIEEKY 753          
BLAST of GE213344 vs. ExPASy Swiss-Prot
Match: SUS2_TULGE (Sucrose synthase 2 OS=Tulipa gesneriana PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 3.508e-53
Identity = 93/118 (78.81%), Postives = 104/118 (88.14%), Query Frame = 2
Query:   23 YKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERY 376
            YKLDG  RWI+AQ NR RNGELYRYIAD+KG FVQPAFYEAFGLTVVE+MTCGLPTFATCHGGPAEII HG SG+HIDPYH D+AAEL+ DFF K K++ +HW  IS+GGLKRIYE+Y
Sbjct:  635 YKLDGHIRWISAQMNRVRNGELYRYIADSKGVFVQPAFYEAFGLTVVESMTCGLPTFATCHGGPAEIIVHGVSGYHIDPYHGDKAAELLVDFFEKSKKDQTHWDAISNGGLKRIYEKY 752          
BLAST of GE213344 vs. ExPASy Swiss-Prot
Match: SUS1_DAUCA (Sucrose synthase isoform 1 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 7.815e-53
Identity = 95/118 (80.51%), Postives = 103/118 (87.29%), Query Frame = 2
Query:   23 YKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERY 376
            YKL+GQFRWI++Q NR RNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFAT HGGPAEII HG SGFHIDPYH +Q AEL+ +FF KCK +PS W  IS GGLKRI E+Y
Sbjct:  636 YKLNGQFRWISSQMNRVRNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATLHGGPAEIIVHGKSGFHIDPYHGEQVAELLVNFFEKCKTDPSQWDAISAGGLKRIQEKY 753          
BLAST of GE213344 vs. ExPASy Swiss-Prot
Match: SUS2_DAUCA (Sucrose synthase isoform 2 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 1.021e-52
Identity = 94/118 (79.66%), Postives = 104/118 (88.14%), Query Frame = 2
Query:   23 YKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERY 376
            YKL+GQFRWI+AQ NR RNGELYR IADTKGAFVQPAFYEAFGLTV+EAMTCGLPTFAT HGGPAEII HG SGFHIDPYH ++AAEL+ +FF +CK  PSHW+ IS GGLKRI E+Y
Sbjct:  630 YKLNGQFRWISAQKNRVRNGELYRCIADTKGAFVQPAFYEAFGLTVIEAMTCGLPTFATIHGGPAEIIVHGTSGFHIDPYHGEKAAELIVNFFERCKTEPSHWETISAGGLKRIQEKY 747          
BLAST of GE213344 vs. ExPASy Swiss-Prot
Match: SUS2_SOLTU (Sucrose synthase OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 1.925e-51
Identity = 92/118 (77.97%), Postives = 105/118 (88.98%), Query Frame = 2
Query:   23 YKLDGQFRWIAAQTNRARNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATCHGGPAEIIEHGASGFHIDPYHPDQAAELMADFFGKCKENPSHWKKISDGGLKRIYERY 376
            + L+GQFRWI++Q NR RNGELYRYIADT+GAFVQPAFYEAFGLTVVEAM+CGLPTFAT  GGPAEII HG SGF IDPYH +QAA+L+ADFF KCK +PSHW+ IS+GGLKRI E+Y
Sbjct:  634 HNLNGQFRWISSQMNRVRNGELYRYIADTRGAFVQPAFYEAFGLTVVEAMSCGLPTFATNQGGPAEIIVHGKSGFQIDPYHGEQAADLLADFFEKCKVDPSHWEAISEGGLKRIQEKY 751          
The following BLAST results are available for this feature:
BLAST of GE213344 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
SUS2_PEA1.126e-5985.71Sucrose synthase 2 OS=Pisum sativum GN=SUS2 PE=2 S... [more]
SUS2_ARATH6.393e-5580.67Sucrose synthase 2 OS=Arabidopsis thaliana GN=At5g... [more]
SUS1_TULGE6.393e-5580.51Sucrose synthase 1 OS=Tulipa gesneriana PE=2 SV=1[more]
SUSY_SOLLC5.412e-5481.36Sucrose synthase OS=Solanum lycopersicum PE=2 SV=1[more]
SUS1_SOLTU9.232e-5481.36Sucrose synthase OS=Solanum tuberosum PE=2 SV=1[more]
SUS1_ARATH1.206e-5380.51Sucrose synthase 1 OS=Arabidopsis thaliana GN=SUS1... [more]
SUS2_TULGE3.508e-5378.81Sucrose synthase 2 OS=Tulipa gesneriana PE=2 SV=1[more]
SUS1_DAUCA7.815e-5380.51Sucrose synthase isoform 1 OS=Daucus carota PE=2 S... [more]
SUS2_DAUCA1.021e-5279.66Sucrose synthase isoform 2 OS=Daucus carota PE=2 S... [more]
SUS2_SOLTU1.925e-5177.97Sucrose synthase OS=Solanum tuberosum PE=3 SV=1[more]

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Properties
Property NameValue
Genbank description206 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.