GE213337

Overview
NameGE213337
Unique NameGE213337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3716 contig Csv1_Contig3716:1296..1660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213337 vs. ExPASy Swiss-Prot
Match: UGPA_PYRPY (UTP--glucose-1-phosphate uridylyltransferase OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 6.465e-47
Identity = 93/113 (82.30%), Postives = 100/113 (88.50%), Query Frame = 1
Query:   10 VAAEVHRSRFLPVKATSDLLLVQSDLYTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVPA 348
            +   V RSRFLPVKATSDLLLVQSDLYTL DGFVTRN ARKNP NPTIELGPEFKKVG++LSRFKSIPSI+EL+SLKV+GDVWFGA + LKGKVTI AKSG KLEIPD AV A
Sbjct:  349 IGINVPRSRFLPVKATSDLLLVQSDLYTLQDGFVTRNSARKNPENPTIELGPEFKKVGSYLSRFKSIPSILELESLKVSGDVWFGAGVVLKGKVTITAKSGVKLEIPDNAVIA 461          
BLAST of GE213337 vs. ExPASy Swiss-Prot
Match: UGPA_SOLTU (UTP--glucose-1-phosphate uridylyltransferase OS=Solanum tuberosum PE=1 SV=3)

HSP 1 Score: 182.956 bits (463), Expect = 4.190e-46
Identity = 93/114 (81.58%), Postives = 101/114 (88.60%), Query Frame = 1
Query:   10 VAAEVHRSRFLPVKATSDLLLVQSDLYTLAD-GFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVPA 348
            + A V RSRFLPVKATSDLLLVQSDLYTL D G+V RN AR NP+NP+IELGPEFKKV NFL RFKSIPSII+LDSLKVTGDVWFG+ +TLKGKVT+AAKSG KLEIPDGAV A
Sbjct:  354 IGANVPRSRFLPVKATSDLLLVQSDLYTLTDEGYVIRNPARSNPSNPSIELGPEFKKVANFLGRFKSIPSIIDLDSLKVTGDVWFGSGVTLKGKVTVAAKSGVKLEIPDGAVIA 467          
BLAST of GE213337 vs. ExPASy Swiss-Prot
Match: UGPA2_ARATH (Probable UTP--glucose-1-phosphate uridylyltransferase 2 OS=Arabidopsis thaliana GN=At3g03250 PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 5.473e-46
Identity = 90/113 (79.65%), Postives = 101/113 (89.38%), Query Frame = 1
Query:    4 SVVAAEVHRSRFLPVKATSDLLLVQSDLYTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAV 342
            + +   V RSRFLPVKA+SDLLLVQSDLYTL DGFVTRN+AR NP+NP+IELGPEFKKV  FLSRFKSIPSI+ELDSLKV+GDVWFG++I LKGKVT+AAKSG KLEIPD AV
Sbjct:  345 NAIGVNVPRSRFLPVKASSDLLLVQSDLYTLVDGFVTRNKARTNPSNPSIELGPEFKKVATFLSRFKSIPSIVELDSLKVSGDVWFGSSIVLKGKVTVAAKSGVKLEIPDRAV 457          
BLAST of GE213337 vs. ExPASy Swiss-Prot
Match: UGPA1_ARATH (UTP--glucose-1-phosphate uridylyltransferase 1 OS=Arabidopsis thaliana GN=At5g17310 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 6.051e-45
Identity = 87/113 (76.99%), Postives = 97/113 (85.84%), Query Frame = 1
Query:    4 SVVAAEVHRSRFLPVKATSDLLLVQSDLYTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAV 342
            + +   V RSRFLPVKATSDLLLVQSDLYTL DGFVTRN+AR NP NP IELGPEFKKV +FLSRFKSIPSI+ELDSLKV+GDVWFG+ + LKGKVT+ A +G KLEIPD AV
Sbjct:  346 NAIGVNVPRSRFLPVKATSDLLLVQSDLYTLVDGFVTRNKARTNPTNPAIELGPEFKKVASFLSRFKSIPSIVELDSLKVSGDVWFGSGVVLKGKVTVKANAGTKLEIPDNAV 458          
BLAST of GE213337 vs. ExPASy Swiss-Prot
Match: UGPA_MUSAC (UTP--glucose-1-phosphate uridylyltransferase OS=Musa acuminata GN=UGPA PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 3.922e-44
Identity = 88/111 (79.28%), Postives = 96/111 (86.49%), Query Frame = 1
Query:   10 VAAEVHRSRFLPVKATSDLLLVQSDLYTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAV 342
            +   V RSRFLPVKATSDLLLVQSDLY L DGFV RN+AR NP+NP+IELGPEFKKV NFLSRFKSIPSI+ELDSLKV+GDVWFG  + LKG V+IAAKSG KLEI DGAV
Sbjct:  345 IGINVPRSRFLPVKATSDLLLVQSDLYMLVDGFVIRNKARTNPSNPSIELGPEFKKVANFLSRFKSIPSIVELDSLKVSGDVWFGEGVVLKGNVSIAAKSGVKLEISDGAV 455          
BLAST of GE213337 vs. ExPASy Swiss-Prot
Match: UGPA_ASTPN (UTP--glucose-1-phosphate uridylyltransferase OS=Astragalus penduliflorus GN=UGP PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 7.396e-43
Identity = 86/113 (76.11%), Postives = 95/113 (84.07%), Query Frame = 1
Query:   10 VAAEVHRSRFLPVKATSDLLLVQSDLYTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVPA 348
            +   V RSRFLPVKATSDLLLVQSDLYT+ +G V RN+AR NP NP+IELGPEFKKV NFL RFKSIPSI+ELDSLKV GDVWFG  + LKGKV+I AKSG K+EIPDGAV A
Sbjct:  349 IGINVPRSRFLPVKATSDLLLVQSDLYTVENGSVIRNKARTNPENPSIELGPEFKKVSNFLGRFKSIPSIVELDSLKVVGDVWFGTGVILKGKVSIVAKSGVKVEIPDGAVIA 461          
BLAST of GE213337 vs. ExPASy Swiss-Prot
Match: UGPA_HORVU (UTP--glucose-1-phosphate uridylyltransferase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 9.660e-43
Identity = 86/111 (77.48%), Postives = 96/111 (86.49%), Query Frame = 1
Query:   10 VAAEVHRSRFLPVKATSDLLLVQSDLYTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAV 342
            +   V RSRFLPVKATSDLLLVQSDLYTL DG+V RN AR  P+NP+IELGPEFKKV NFL+RFKSIPSI+ELDSLKV+GDV FG+ + LKG VTIAAK+G KLEIPDGAV
Sbjct:  351 IGINVPRSRFLPVKATSDLLLVQSDLYTLVDGYVIRNPARVKPSNPSIELGPEFKKVANFLARFKSIPSIVELDSLKVSGDVSFGSGVVLKGNVTIAAKAGVKLEIPDGAV 461          
BLAST of GE213337 vs. ExPASy Swiss-Prot
Match: UGPA_MOUSE (UTP--glucose-1-phosphate uridylyltransferase OS=Mus musculus GN=Ugp2 PE=2 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 7.431e-27
Identity = 60/107 (56.07%), Postives = 79/107 (73.83%), Query Frame = 1
Query:   22 VHRSRFLPVKATSDLLLVQSDLYTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAV 342
            V RSRFLPVK TSDLLLV S+LY+L  G +T +E R+ P  P ++LG  F KV ++L RF+SIP ++ELD L V+GDV FG N++LKG V I A  G++++IP GAV
Sbjct:  387 VPRSRFLPVKTTSDLLLVMSNLYSLNAGSLTMSEKREFPTVPLVKLGSSFTKVQDYLRRFESIPDMLELDHLTVSGDVTFGKNVSLKGTVIIIANHGDRIDIPPGAV 493          
BLAST of GE213337 vs. ExPASy Swiss-Prot
Match: UGPA_HUMAN (UTP--glucose-1-phosphate uridylyltransferase OS=Homo sapiens GN=UGP2 PE=1 SV=5)

HSP 1 Score: 119.013 bits (297), Expect = 7.431e-27
Identity = 60/107 (56.07%), Postives = 79/107 (73.83%), Query Frame = 1
Query:   22 VHRSRFLPVKATSDLLLVQSDLYTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAV 342
            V RSRFLPVK TSDLLLV S+LY+L  G +T +E R+ P  P ++LG  F KV ++L RF+SIP ++ELD L V+GDV FG N++LKG V I A  G++++IP GAV
Sbjct:  387 VPRSRFLPVKTTSDLLLVMSNLYSLNAGSLTMSEKREFPTVPLVKLGSSFTKVQDYLRRFESIPDMLELDHLTVSGDVTFGKNVSLKGTVIIIANHGDRIDIPPGAV 493          
BLAST of GE213337 vs. ExPASy Swiss-Prot
Match: UGPA_CRIGR (UTP--glucose-1-phosphate uridylyltransferase OS=Cricetulus griseus GN=UGP2 PE=2 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 7.431e-27
Identity = 60/107 (56.07%), Postives = 79/107 (73.83%), Query Frame = 1
Query:   22 VHRSRFLPVKATSDLLLVQSDLYTLADGFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAV 342
            V RSRFLPVK TSDLLLV S+LY+L  G +T +E R+ P  P ++LG  F KV ++L RF+SIP ++ELD L V+GDV FG N++LKG V I A  G++++IP GAV
Sbjct:  387 VPRSRFLPVKTTSDLLLVMSNLYSLNAGSLTMSEKREFPTVPLVKLGSSFTKVQDYLRRFESIPDMLELDHLTVSGDVTFGKNVSLKGTVIIIANHGDRIDIPPGAV 493          
The following BLAST results are available for this feature:
BLAST of GE213337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
UGPA_PYRPY6.465e-4782.30UTP--glucose-1-phosphate uridylyltransferase OS=Py... [more]
UGPA_SOLTU4.190e-4681.58UTP--glucose-1-phosphate uridylyltransferase OS=So... [more]
UGPA2_ARATH5.473e-4679.65Probable UTP--glucose-1-phosphate uridylyltransfer... [more]
UGPA1_ARATH6.051e-4576.99UTP--glucose-1-phosphate uridylyltransferase 1 OS=... [more]
UGPA_MUSAC3.922e-4479.28UTP--glucose-1-phosphate uridylyltransferase OS=Mu... [more]
UGPA_ASTPN7.396e-4376.11UTP--glucose-1-phosphate uridylyltransferase OS=As... [more]
UGPA_HORVU9.660e-4377.48UTP--glucose-1-phosphate uridylyltransferase OS=Ho... [more]
UGPA_MOUSE7.431e-2756.07UTP--glucose-1-phosphate uridylyltransferase OS=Mu... [more]
UGPA_HUMAN7.431e-2756.07UTP--glucose-1-phosphate uridylyltransferase OS=Ho... [more]
UGPA_CRIGR7.431e-2756.07UTP--glucose-1-phosphate uridylyltransferase OS=Cr... [more]

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Properties
Property NameValue
Genbank description197 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.