GE213334

Overview
NameGE213334
Unique NameGE213334
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12099 contig Csv1_Contig12099:99..388. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213334 vs. ExPASy Swiss-Prot
Match: CHLG_ARATH (Chlorophyll synthase, chloroplastic OS=Arabidopsis thaliana GN=CHLG PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.630e-37
Identity = 76/89 (85.39%), Postives = 83/89 (93.26%), Query Frame = 2
Query:   23 YSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGPETAKWICVGAIDITQISVAGYLLGAGKPYYALALLALIVPQIVFQFQYLPGRPLE 289
            YSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFG ETAKWICVGAIDITQ+SVAGYLL +GKPYYALAL+ALI+PQIVFQF+Y    P++
Sbjct:  273 YSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGTETAKWICVGAIDITQLSVAGYLLASGKPYYALALVALIIPQIVFQFKYFLKDPVK 361          
BLAST of GE213334 vs. ExPASy Swiss-Prot
Match: CHLG_ORYSJ (Chlorophyll synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=CHLG PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.380e-36
Identity = 74/89 (83.15%), Postives = 80/89 (89.89%), Query Frame = 2
Query:   23 YSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGPETAKWICVGAIDITQISVAGYLLGAGKPYYALALLALIVPQIVFQFQYLPGRPLE 289
            YSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFG ETAKWICVGAIDITQ+SVAGYL  +GKPYYALALL L +PQ+VFQFQY    P++
Sbjct:  262 YSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGMETAKWICVGAIDITQLSVAGYLFSSGKPYYALALLGLTIPQVVFQFQYFLKDPVK 350          
BLAST of GE213334 vs. ExPASy Swiss-Prot
Match: CHLG_AVESA (Chlorophyll synthase, chloroplastic OS=Avena sativa GN=CHLG PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.093e-33
Identity = 69/89 (77.53%), Postives = 76/89 (85.39%), Query Frame = 2
Query:   23 YSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGPETAKWICVGAIDITQISVAGYLLGAGKPYYALALLALIVPQIVFQFQYLPGRPLE 289
            YSIAGLGIAIVNDFKS+EGDR LGLQSLPVAFG ETAKWICVGAIDITQ+SVA YLL  GK YYALALL L +PQ++ QFQY    P++
Sbjct:  264 YSIAGLGIAIVNDFKSIEGDRTLGLQSLPVAFGMETAKWICVGAIDITQLSVAAYLLSTGKLYYALALLGLTIPQVILQFQYFLKDPVK 352          
BLAST of GE213334 vs. ExPASy Swiss-Prot
Match: BCHG_RHOCA (Bacteriochlorophyll synthase 33 kDa chain OS=Rhodobacter capsulatus GN=bchG PE=4 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.957e-11
Identity = 32/75 (42.67%), Postives = 45/75 (60.00%), Query Frame = 2
Query:   23 YSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGPETAKWICVGAIDITQISVAGYLLGAGKPYYALALLALIVPQ 247
            Y++   GI  +NDFK++EGDR LG++SLP  +GPE A  I    + + Q  V   L    KPY+A A+L L+  Q
Sbjct:  188 YALGAHGIMTINDFKAIEGDRKLGIKSLPAVYGPEVAAKIACTVMGLAQALVITMLYLFSKPYHATAVLVLLCGQ 262          
The following BLAST results are available for this feature:
BLAST of GE213334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CHLG_ARATH1.630e-3785.39Chlorophyll synthase, chloroplastic OS=Arabidopsis... [more]
CHLG_ORYSJ1.380e-3683.15Chlorophyll synthase, chloroplastic OS=Oryza sativ... [more]
CHLG_AVESA1.093e-3377.53Chlorophyll synthase, chloroplastic OS=Avena sativ... [more]
BCHG_RHOCA9.957e-1142.67Bacteriochlorophyll synthase 33 kDa chain OS=Rhodo... [more]
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Properties
Property NameValue
Genbank description194 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.