GE213327

Overview
NameGE213327
Unique NameGE213327
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8206 contig Csv1_Contig8206:81..596. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213327 vs. ExPASy Swiss-Prot
Match: PAP_CITUN (Plastid-lipid-associated protein, chloroplastic OS=Citrus unshiu GN=PAP PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 3.755e-66
Identity = 133/155 (85.81%), Postives = 133/155 (85.81%), Query Frame = -1
Query:   24 MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLVLTRAAXXXXXXXXXXXXXXXXXXXXXXESPKEVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVY 488
            MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLVLTRAA                      ESPKEVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVY
Sbjct:    1 MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLVLTRAADDDEWGPEKEKEGGGALAVAEEESPKEVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVY 155          
BLAST of GE213327 vs. ExPASy Swiss-Prot
Match: CHRC_CUCSA (Chromoplast-specific carotenoid-associated protein, chromoplast OS=Cucumis sativus GN=CHRC PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 4.477e-35
Identity = 84/156 (53.85%), Postives = 99/156 (63.46%), Query Frame = -1
Query:   24 MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSV-RISRSLAKKSFLSIQGFTRARPLVLTRAAXXXXXXXXXXXXXXXXXXXXXXESPKEVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVY 488
            MA +SQ NQ PCKTL+ NPP  Q TSKPS+ P+ S+   +R+ A KS +S++   + R  VL                          E P E +EI  LKKALVDSFYGTDRGL  + +TRAEIVELITQLE+KNPTPAPTEALTLLN KWIL Y
Sbjct:    1 MAFVSQFNQLPCKTLALNPPQPQLTSKPSVFPIASIGATARAAAGKSLISVRPAFKVRA-VLNDDEWGEDKDEKYGDDSSVAVAEKEEEKPLEPSEIYKLKKALVDSFYGTDRGLRVSRDTRAEIVELITQLESKNPTPAPTEALTLLNGKWILAY 155          
BLAST of GE213327 vs. ExPASy Swiss-Prot
Match: LIPC_SOLDE (Light-induced protein, chloroplastic OS=Solanum demissum PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 5.123e-31
Identity = 76/158 (48.10%), Postives = 93/158 (58.86%), Query Frame = -1
Query:   24 MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLVLTRAAXXXXXXXXXXXXXXXXXXXXXXES---PKEVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVY 488
            MASIS  NQ PCKTL     +++ TSK S LP++S        +   +S++ FT  +P    +A                            PKE +EI+ LKK L DS YGT+RGL+A+SETRAEIVELITQLE+KNP PAPTEALTLLN KWIL Y
Sbjct:    1 MASISSLNQIPCKTLQITSQYSKPTSKISTLPISSTNFLSKTEQHRSISVKEFTNPKPKFTAQATNYDKEDEWGPEVEQIRPGGVAVVEEEPPKEPSEIELLKKQLADSLYGTNRGLSASSETRAEIVELITQLESKNPNPAPTEALTLLNGKWILAY 158          
BLAST of GE213327 vs. ExPASy Swiss-Prot
Match: LIPC_SOLTU (Light-induced protein, chloroplastic OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 8.738e-31
Identity = 76/158 (48.10%), Postives = 92/158 (58.23%), Query Frame = -1
Query:   24 MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLVLTRAAXXXXXXXXXXXXXXXXXXXXXXES---PKEVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVY 488
            MASIS  NQ PCKTL     +++ TSK S LP++S            +S++ FT  +P    +A                            PKE +EI+ LKK L DS YGT+RGL+A+SETRAEIVELITQLE+KNP PAPTEALTLLN KWIL Y
Sbjct:    1 MASISSLNQIPCKTLQITSQYSKPTSKISTLPISSTNFPSKTELHRSISVKEFTNPKPKFTAQATNYDKEDEWGPEVEQIRPGGVAVVEEEPPKEPSEIELLKKQLADSLYGTNRGLSASSETRAEIVELITQLESKNPNPAPTEALTLLNGKWILAY 158          
BLAST of GE213327 vs. ExPASy Swiss-Prot
Match: PAP2_BRACM (Plastid lipid-associated protein 2, chloroplastic OS=Brassica campestris GN=PAP2 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.765e-23
Identity = 69/155 (44.52%), Postives = 90/155 (58.06%), Query Frame = -1
Query:   24 MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLVLTRAAXXXXXXXXXXXXXXXXXXXXXXESPKEVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVY 488
            MA++   NQFPCKT  Q+  +++  SKP   P + V +S    + SF   + F  +R     R                        E+ + V E + LK++LVDS YGTDRGL+A+SETRAEI +LITQLE+KNPTPAPT+AL LLN KWIL Y
Sbjct:    1 MATVQFFNQFPCKTRVQSSANSKPLSKP---PSSLVPMSALTRRPSFPPGE-FAVSRSDFRVRVIDAEDELDPETSEGGGSALLMAEEAIESVEETEVLKRSLVDSLYGTDRGLSASSETRAEIGDLITQLESKNPTPAPTDALFLLNGKWILAY 151          
BLAST of GE213327 vs. ExPASy Swiss-Prot
Match: PAP1_ARATH (Probable plastid-lipid-associated protein 1, chloroplastic OS=Arabidopsis thaliana GN=PAP1 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.765e-23
Identity = 67/159 (42.14%), Postives = 86/159 (54.09%), Query Frame = -1
Query:   24 MASISQTNQFPCKTLSQNPPHNQFTSK-PSILPLNSVRISRSLAKKSFLSIQGFTRARPLVLTRAAXXXXXXXXXXXXXXXXXXXXXXESPK---EVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVY 488
            MA++    QFPCKTL+ +  + +  SK P +LP+NS+     +         G +  RP    RA                        + K    V E + LK++L DS YGTDRGL+ +S+TRAEI ELITQLE+KNPTPAP EAL LLN KWIL Y
Sbjct:    1 MATVPLFTQFPCKTLNPSSSNTKHQSKSPILLPINSINRRSEI---------GVSVHRPDFKIRATDIDDEWGQDGVERVFASSSTVSVADKAIESVEETERLKRSLADSLYGTDRGLSVSSDTRAEISELITQLESKNPTPAPNEALFLLNGKWILAY 150          
BLAST of GE213327 vs. ExPASy Swiss-Prot
Match: PAP2_ARATH (Probable plastid-lipid-associated protein 2, chloroplastic OS=Arabidopsis thaliana GN=PAP2 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.494e-22
Identity = 66/156 (42.31%), Postives = 89/156 (57.05%), Query Frame = -1
Query:   24 MASISQTNQFPCKTLSQNPPHNQFTSKPSIL-PLNSVRISRSLAKKSFLSIQGFTRARPLVLTRAAXXXXXXXXXXXXXXXXXXXXXXESPKEVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVY 488
            MA++  + QF C+T     P+++  SKP  L P+ S+ I R +     +++      R +   RA                          ++V E + LK++LVDS YGTDRGL+A+SETRAEI +LITQLE+KNPTPAPTEAL LLN KWIL Y
Sbjct:    1 MATVQLSTQFSCQTRVSISPNSKSISKPPFLVPVTSI-IHRPMISTGGIAVS----PRRVFKVRATDTGEIGSALLAAEEAI---------EDVEETERLKRSLVDSLYGTDRGLSASSETRAEIGDLITQLESKNPTPAPTEALFLLNGKWILAY 142          
BLAST of GE213327 vs. ExPASy Swiss-Prot
Match: PAP2_ORYSJ (Probable plastid-lipid-associated protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PAP2 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.546e-19
Identity = 45/62 (72.58%), Postives = 53/62 (85.48%), Query Frame = -1
Query:   24 TEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVY 209
            +E+  LK  L ++ YGT+RGL A+SETRAE+VELITQLEA+NPTPAPTEALTLLN KWIL Y
Sbjct:   90 SEVAELKAKLKEALYGTERGLRASSETRAEVVELITQLEARNPTPAPTEALTLLNGKWILAY 151          
BLAST of GE213327 vs. ExPASy Swiss-Prot
Match: PAP1_BRACM (Plastid lipid-associated protein 1, chloroplastic OS=Brassica campestris GN=PAP1 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.875e-19
Identity = 61/151 (40.40%), Postives = 77/151 (50.99%), Query Frame = -1
Query:   24 NQFPCKTLSQNPPHNQFTSK-PSILPLNSVRISRSLAKKSFLSIQGFTRAR--PLVLTRAAXXXXXXXXXXXXXXXXXXXXXXESPKEVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVY 467
            +QF CKT   +   + F SK P +LP+N +    ++ +  F            P    R                        E+ +   E + LK+ L  S YGTDRGL+A+SETRAEI ELITQLE+KNP PAP EAL LLN KWILVY
Sbjct:    9 SQFTCKTPITSSSTSSFQSKSPILLPINPINRRIAVHRHDFKVRASDVNDEWGPDSKGRGGDVDDEWGPEIGLNSSVAEKVAEEAIESAEETERLKRVLAGSLYGTDRGLSASSETRAEISELITQLESKNPNPAPNEALFLLNGKWILVY 159          
BLAST of GE213327 vs. ExPASy Swiss-Prot
Match: PAP3_ORYSJ (Probable plastid-lipid-associated protein 3, chloroplastic OS=Oryza sativa subsp. japonica GN=PAP3 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.656e-13
Identity = 38/73 (52.05%), Postives = 47/73 (64.38%), Query Frame = -1
Query:   24 PKEVTEIDN-------LKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVY 221
            P  V E DN       LK+ LVD+ YG+D G  A+SE R E++EL+TQLEA NPTP P +A  LL   WIL+Y
Sbjct:  133 PPPVPEEDNEEERREELKRCLVDTVYGSDLGFRASSEVRGEVLELVTQLEATNPTPEPVQATHLLAGNWILIY 205          
The following BLAST results are available for this feature:
BLAST of GE213327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PAP_CITUN3.755e-6685.81Plastid-lipid-associated protein, chloroplastic OS... [more]
CHRC_CUCSA4.477e-3553.85Chromoplast-specific carotenoid-associated protein... [more]
LIPC_SOLDE5.123e-3148.10Light-induced protein, chloroplastic OS=Solanum de... [more]
LIPC_SOLTU8.738e-3148.10Light-induced protein, chloroplastic OS=Solanum tu... [more]
PAP2_BRACM1.765e-2344.52Plastid lipid-associated protein 2, chloroplastic ... [more]
PAP1_ARATH1.765e-2342.14Probable plastid-lipid-associated protein 1, chlor... [more]
PAP2_ARATH1.494e-2242.31Probable plastid-lipid-associated protein 2, chlor... [more]
PAP2_ORYSJ1.546e-1972.58Probable plastid-lipid-associated protein 2, chlor... [more]
PAP1_BRACM5.875e-1940.40Plastid lipid-associated protein 1, chloroplastic ... [more]
PAP3_ORYSJ1.656e-1352.05Probable plastid-lipid-associated protein 3, chlor... [more]

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Properties
Property NameValue
Genbank description185 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.