GE213326

Overview
NameGE213326
Unique NameGE213326
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9552 contig Csv1_Contig9552:1157..1498. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213326 vs. ExPASy Swiss-Prot
Match: ODPB_STAPU (Pyruvate dehydrogenase E1 component subunit beta OS=Staurastrum punctulatum GN=pdhB PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.181e-24
Identity = 55/69 (79.71%), Postives = 60/69 (86.96%), Query Frame = -3
Query:  119 EVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVAQPAQIVTAVEQLC 325
            +VLIVEECMRTGGIGASL A I E+  D+LDAPI+CLSSQDVPTPY+G LEE TV QPAQIV AVEQLC
Sbjct:  255 KVLIVEECMRTGGIGASLRATIMEHLFDFLDAPIMCLSSQDVPTPYSGPLEELTVIQPAQIVQAVEQLC 323          
BLAST of GE213326 vs. ExPASy Swiss-Prot
Match: ODPB_ZYGCR (Pyruvate dehydrogenase E1 component subunit beta OS=Zygnema circumcarinatum GN=pdhB PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 3.436e-24
Identity = 53/70 (75.71%), Postives = 60/70 (85.71%), Query Frame = -3
Query:  116 EVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVAQPAQIVTAVEQLCQ 325
            +VLIVEECMRTGGIGA+L AAI E+F DYLDAPI+CLSSQDVPTPY+  LEE TV QP QI+  VEQLC+
Sbjct:  255 KVLIVEECMRTGGIGATLRAAIMEHFFDYLDAPILCLSSQDVPTPYSSPLEELTVIQPNQIIQVVEQLCE 324          
BLAST of GE213326 vs. ExPASy Swiss-Prot
Match: ODPB_CHAGL (Pyruvate dehydrogenase E1 component subunit beta OS=Chaetosphaeridium globosum GN=pdhB PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.861e-24
Identity = 53/70 (75.71%), Postives = 60/70 (85.71%), Query Frame = -3
Query:  116 EVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVAQPAQIVTAVEQLCQ 325
            +VLIVEECMRTGGIGASL AAI E+  DYLDAPI CLSSQDVPTPY+G LEE TV QP QI+ AVE++C+
Sbjct:  255 KVLIVEECMRTGGIGASLRAAILEDLFDYLDAPIQCLSSQDVPTPYSGPLEELTVIQPNQIIQAVEEMCK 324          
BLAST of GE213326 vs. ExPASy Swiss-Prot
Match: ODPB_CHAVU (Pyruvate dehydrogenase E1 component subunit beta OS=Chara vulgaris GN=pdhB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.265e-18
Identity = 44/68 (64.71%), Postives = 55/68 (80.88%), Query Frame = -3
Query:  122 EVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVAQPAQIVTAVEQL 325
            +VLIVEECM+TGGIG +L +AI E+  D+LD PI+ LSSQDVPTPY G LE+ TV QP+QIV A E++
Sbjct:  255 KVLIVEECMKTGGIGTTLKSAILESLFDFLDTPIMSLSSQDVPTPYNGFLEDLTVIQPSQIVEAAEKI 322          
BLAST of GE213326 vs. ExPASy Swiss-Prot
Match: ODPB_GRATL (Pyruvate dehydrogenase E1 component subunit beta OS=Gracilaria tenuistipitata var. liui GN=pdhB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.197e-18
Identity = 41/68 (60.29%), Postives = 54/68 (79.41%), Query Frame = -3
Query:  122 EVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVAQPAQIVTAVEQL 325
            +++IVEECM+TGGIGA + A I +N+ D+LDAPIV LSSQD+PTPY G LE+ TV  P QI+ AV+ +
Sbjct:  255 KLIIVEECMKTGGIGAEIIAQINDNYFDFLDAPIVRLSSQDIPTPYNGKLEKATVIYPQQIIEAVKSI 322          
BLAST of GE213326 vs. ExPASy Swiss-Prot
Match: ODPB_PORPU (Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra purpurea GN=pdhB PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.826e-17
Identity = 43/67 (64.18%), Postives = 52/67 (77.61%), Query Frame = -3
Query:  122 VLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVAQPAQIVTAVEQL 322
            VLIVEECM+T GIGA L A I E+  D LDAP+V LSSQD+PTPY G+LE+ TV QP QI+ AV+ +
Sbjct:  256 VLIVEECMKTAGIGAELIAQINEHLFDELDAPVVRLSSQDIPTPYNGSLEQATVIQPHQIIDAVKNI 322          
BLAST of GE213326 vs. ExPASy Swiss-Prot
Match: ODPB_PORYE (Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra yezoensis GN=pdhB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.385e-17
Identity = 43/68 (63.24%), Postives = 53/68 (77.94%), Query Frame = -3
Query:  122 EVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVAQPAQIVTAVEQL 325
            +VLIVEECM+T GIGA L A I E   D LDAP+V LSSQD+PTPY G+LE+ TV QP+QIV +V+ +
Sbjct:  255 KVLIVEECMKTAGIGAELIAQINEYLFDELDAPVVRLSSQDIPTPYNGSLEQATVIQPSQIVDSVKSI 322          
BLAST of GE213326 vs. ExPASy Swiss-Prot
Match: ODPB_CYAME (Pyruvate dehydrogenase E1 component subunit beta OS=Cyanidioschyzon merolae GN=pdhB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.600e-13
Identity = 39/68 (57.35%), Postives = 48/68 (70.59%), Query Frame = -3
Query:  122 EVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVAQPAQIVTAVEQL 325
            + +IVEECM+TGGI A + A I  +  D LDAPI  LSS+DVPTPY G LE+  + QP QIV AV+ L
Sbjct:  256 KAIIVEECMQTGGIAAEVMAQIYSHAFDELDAPIRRLSSKDVPTPYNGYLEQACLVQPTQIVEAVKTL 323          
BLAST of GE213326 vs. ExPASy Swiss-Prot
Match: ODPB_MESVI (Pyruvate dehydrogenase E1 component subunit beta OS=Mesostigma viride GN=pdhB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.564e-13
Identity = 38/68 (55.88%), Postives = 48/68 (70.59%), Query Frame = -3
Query:  122 EVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVAQPAQIVTAVEQL 325
            +VLIVEE M TGGI   L + I ENF D LD   +CLSS +VPTPY+G LEE ++ Q A I+ +VEQ+
Sbjct:  255 KVLIVEESMMTGGISNVLQSLILENFFDDLDNRPMCLSSPNVPTPYSGPLEEVSIVQTADIIESVEQI 322          
BLAST of GE213326 vs. ExPASy Swiss-Prot
Match: ODPB_CYACA (Pyruvate dehydrogenase E1 component subunit beta OS=Cyanidium caldarium GN=pdhB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.079e-13
Identity = 37/70 (52.86%), Postives = 47/70 (67.14%), Query Frame = -3
Query:  116 EVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVAQPAQIVTAVEQLCQ 325
            +++IVEEC +TGGI A L + I    +D LD+P V LSS+DVP PY G LE+ T+ QP QIV  V  L Q
Sbjct:  255 KIVIVEECAQTGGIAAELISLINTYLYDELDSPAVRLSSKDVPIPYNGNLEKSTLIQPDQIVDVVTNLLQ 324          
The following BLAST results are available for this feature:
BLAST of GE213326 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
ODPB_STAPU1.181e-2479.71Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ZYGCR3.436e-2475.71Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CHAGL5.861e-2475.71Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CHAVU1.265e-1864.71Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_GRATL8.197e-1860.29Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PORPU1.826e-1764.18Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PORYE2.385e-1763.24Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CYAME1.600e-1357.35Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_MESVI3.564e-1355.88Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CYACA6.079e-1352.86Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank description184 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.