GE213324

Overview
NameGE213324
Unique NameGE213324
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9802 contig Csv1_Contig9802:620..856. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213324 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.242e-22
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = -2
Query:   26 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGCVGNDA 217
            V+SFK+AIWFWMTAQ  KPSCH+VI+  W PSA D  AGR+PGYG+ TNIINGGIECG   NDA
Sbjct:  165 VVSFKTAIWFWMTAQGNKPSCHDVILGRWTPSAADTAAGRVPGYGVITNIINGGIECGVGQNDA 228          
BLAST of GE213324 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 1.234e-21
Identity = 43/58 (74.14%), Postives = 50/58 (86.21%), Query Frame = -2
Query:   44 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECG 217
            V++FK+AIWFWMTAQPPKPSCH VI  +W+PS  D  AGRLPGYG+ TNIINGG+ECG
Sbjct:  232 VIAFKAAIWFWMTAQPPKPSCHAVIAGQWQPSDADRAAGRLPGYGVITNIINGGLECG 289          
BLAST of GE213324 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.612e-21
Identity = 42/65 (64.62%), Postives = 53/65 (81.54%), Query Frame = -2
Query:   23 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGCVGNDAV 217
            V+SFK+A+WFWMT Q PKPSCH+VI  +W PS+ D+ AGR+PGYG+ TNIINGG+ECG   +D V
Sbjct:  232 VVSFKTALWFWMTPQSPKPSCHDVITGQWTPSSGDIAAGRVPGYGVITNIINGGLECGFGPDDRV 296          
BLAST of GE213324 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.105e-21
Identity = 47/64 (73.44%), Postives = 52/64 (81.25%), Query Frame = -2
Query:   26 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGCVGNDA 217
            V+SFKSAIWFWMTAQ PKPSCH+VI   W PSA D  A RLPGYG+ TNIINGG+ECG  G+DA
Sbjct:  231 VVSFKSAIWFWMTAQSPKPSCHDVITGRWTPSAADRAANRLPGYGVITNIINGGLECG-HGSDA 293          
BLAST of GE213324 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 3.591e-21
Identity = 45/69 (65.22%), Postives = 51/69 (73.91%), Query Frame = -2
Query:   11 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGCVGNDAVPRPR 217
            V+SFK+AIWFWM  Q PKPSCH VI   W PSA D+ AGR+PGYG+ TNIINGGIECG  G +A    R
Sbjct:  234 VISFKTAIWFWMKPQSPKPSCHAVITGNWTPSAADLEAGRVPGYGVITNIINGGIECGQGGPNAANEDR 302          
BLAST of GE213324 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.690e-21
Identity = 40/59 (67.80%), Postives = 50/59 (84.75%), Query Frame = -2
Query:   44 QVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECG 220
            +VLSFK+A+WFWMT Q PKPSCH+V+   W+PSA D  AGRLPGYG+ TN++NGG+ECG
Sbjct:  147 RVLSFKTALWFWMTPQAPKPSCHDVLTGRWQPSAADTAAGRLPGYGVLTNLLNGGLECG 205          
BLAST of GE213324 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.690e-21
Identity = 43/58 (74.14%), Postives = 49/58 (84.48%), Query Frame = -2
Query:   44 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECG 217
            V+SFKSAIWFWMT Q PKPSCH+VII  W+PSA D  A RLPG+G+ TNIINGG+ECG
Sbjct:  225 VISFKSAIWFWMTPQSPKPSCHDVIIGRWQPSAADRAANRLPGFGVITNIINGGLECG 282          
BLAST of GE213324 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 4.690e-21
Identity = 42/58 (72.41%), Postives = 49/58 (84.48%), Query Frame = -2
Query:   44 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECG 217
            V+SFKSA+WFWMT Q PKPSCH+VII  W+PSA D  A RLPG+G+ TNIINGG+ECG
Sbjct:  226 VISFKSALWFWMTPQSPKPSCHDVIIGRWQPSAGDRAANRLPGFGVITNIINGGLECG 283          
BLAST of GE213324 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.000e-21
Identity = 40/58 (68.97%), Postives = 51/58 (87.93%), Query Frame = -2
Query:   44 VLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECG 217
            V++F++AIWFWMTAQ PKPSCH+VI ++W PS +D ++GRLPGYG+ TNIINGG ECG
Sbjct:  158 VVAFRTAIWFWMTAQSPKPSCHDVITNQWTPSGDDRSSGRLPGYGMATNIINGGEECG 215          
BLAST of GE213324 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.365e-20
Identity = 41/57 (71.93%), Postives = 47/57 (82.46%), Query Frame = -2
Query:   44 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECG 214
            +SFKSA WFWMT Q PKPSCH+VII  W PS +D  AGR+PG+GL TNIINGG+ECG
Sbjct:  219 ISFKSAFWFWMTPQSPKPSCHDVIIGAWSPSGSDQAAGRVPGFGLITNIINGGLECG 275          
The following BLAST results are available for this feature:
BLAST of GE213324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
CHI8_ORYSJ4.242e-2271.88Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_ARATH1.234e-2174.14Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI9_ORYSJ1.612e-2164.62Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI3_TOBAC2.105e-2173.44Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHI6_POPTR3.591e-2165.22Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHIT_CARPA4.690e-2167.80Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI4_SOLTU4.690e-2174.14Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHI1_TOBAC4.690e-2172.41Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI11_ORYSJ8.000e-2168.97Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI1_THECC1.365e-2071.93Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]

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Properties
Property NameValue
Genbank description182 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.