GE213317

Overview
NameGE213317
Unique NameGE213317
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9575 contig Csv1_Contig9575:878..1542. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213317 vs. ExPASy Swiss-Prot
Match: UXS1_RAT (UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1 PE=1 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.279e-58
Identity = 107/182 (58.79%), Postives = 135/182 (74.18%), Query Frame = 3
Query:   24 QKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 569
            Q E YWG+VNPIG R+CYDEGKR AET+   Y +  GVEVR+ARIFNT+GPRM ++DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV GL+ LM      P NLGNP E T+LE AQ+++  +   ++I+F    +DDP KRKPDI +AK +LGWEP V L +GL K +  FR+ +
Sbjct:  214 QSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKEL 395          
BLAST of GE213317 vs. ExPASy Swiss-Prot
Match: UXS1_PONAB (UDP-glucuronic acid decarboxylase 1 OS=Pongo abelii GN=UXS1 PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.279e-58
Identity = 107/182 (58.79%), Postives = 135/182 (74.18%), Query Frame = 3
Query:   24 QKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 569
            Q E YWG+VNPIG R+CYDEGKR AET+   Y +  GVEVR+ARIFNT+GPRM ++DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV GL+ LM      P NLGNP E T+LE AQ+++  +   ++I+F    +DDP KRKPDI +AK +LGWEP V L +GL K +  FR+ +
Sbjct:  214 QSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKEL 395          
BLAST of GE213317 vs. ExPASy Swiss-Prot
Match: UXS1_MOUSE (UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.279e-58
Identity = 107/182 (58.79%), Postives = 135/182 (74.18%), Query Frame = 3
Query:   24 QKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 569
            Q E YWG+VNPIG R+CYDEGKR AET+   Y +  GVEVR+ARIFNT+GPRM ++DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV GL+ LM      P NLGNP E T+LE AQ+++  +   ++I+F    +DDP KRKPDI +AK +LGWEP V L +GL K +  FR+ +
Sbjct:  214 QSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKEL 395          
BLAST of GE213317 vs. ExPASy Swiss-Prot
Match: UXS1_HUMAN (UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.279e-58
Identity = 107/182 (58.79%), Postives = 135/182 (74.18%), Query Frame = 3
Query:   24 QKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 569
            Q E YWG+VNPIG R+CYDEGKR AET+   Y +  GVEVR+ARIFNT+GPRM ++DGRVVSNF+ QAL+ EPLTVYG G QTR+FQ+VSDLV GL+ LM      P NLGNP E T+LE AQ+++  +   ++I+F    +DDP KRKPDI +AK +LGWEP V L +GL K +  FR+ +
Sbjct:  214 QSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKEL 395          
BLAST of GE213317 vs. ExPASy Swiss-Prot
Match: UXS1_DANRE (UDP-glucuronic acid decarboxylase 1 OS=Danio rerio GN=uxs1 PE=2 SV=2)

HSP 1 Score: 218.394 bits (555), Expect = 2.666e-56
Identity = 104/182 (57.14%), Postives = 133/182 (73.08%), Query Frame = 3
Query:   24 QKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 569
            Q E YWG+VNPIG R+CYDEGKR AET+   Y +  GVEVR+ARIFNT+G RM ++DGRVVSNF+ QAL+ E LTVYG G QTR+FQ+VSDLV GL+ LM      P NLGNP E T+LE AQ+++  +   + I+F P  +DDP +R+PDI +AK LLGWEP V L +GL K ++ F + +
Sbjct:  212 QNEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGSRMHMNDGRVVSNFILQALQGEALTVYGSGSQTRAFQYVSDLVNGLVSLMNSNISSPVNLGNPEEHTILEFAQLIKSLVASRSHIQFLPEAQDDPQRRRPDIRKAKLLLGWEPVVPLEEGLNKTIQYFSREL 393          
BLAST of GE213317 vs. ExPASy Swiss-Prot
Match: UXS1_XENTR (UDP-glucuronic acid decarboxylase 1 OS=Xenopus tropicalis GN=uxs1 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 7.758e-56
Identity = 102/182 (56.04%), Postives = 134/182 (73.63%), Query Frame = 3
Query:   24 QKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGLPKMVKDFRQRI 569
            Q E YWG+VNPIG R+CYDEGKR AET+   Y +  GVEVR+ARIFNT+GPRM ++DGRVVSNF+ QAL+ E LTVYG G+QTR+FQ+VSDLV GL+ LM      P NLGNP E ++++ A+++++ +    +I F    +DDP +RKPDI +AK LLGWEP V L +GL K +  FR+ +
Sbjct:  215 QSEEYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEQLTVYGSGEQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPQEHSIVQFARLIKQLVGSGGEISFLSEAQDDPQRRKPDIRKAKLLLGWEPVVPLEEGLNKTIHYFRKEL 396          
BLAST of GE213317 vs. ExPASy Swiss-Prot
Match: YTCB_BACSU (Uncharacterized UDP-glucose epimerase ytcB OS=Bacillus subtilis GN=ytcB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.882e-18
Identity = 53/177 (29.94%), Postives = 92/177 (51.98%), Query Frame = 3
Query:   12 RGRGQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHV--GPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGL 536
            +G+  + T    ++P GV       K T E L   Y +  G+ + I R F  YGPR   D        + Q L+++PLT++GDG+Q+R F ++SD V+G+  ++   H+     N+G     ++L++  ++++     A + F      +P     DIS+AK+LL ++P  SL+ GL
Sbjct:  134 QGKVSENTSLSPLSPYGVT------KLTGEKLCHVYKQSFGIPIVILRFFTVYGPRQRPD--MAFHRLIKQHLQQKPLTIFGDGQQSRDFTYISDCVKGITAVLGKPHLIGETVNIGGAERASVLKVVSLIEDISGRKATLHFSDKIAGEPSNTWADISKAKQLLHYDPATSLKDGL 302          
BLAST of GE213317 vs. ExPASy Swiss-Prot
Match: GME_ARATH (GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana GN=At5g28840 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.982e-15
Identity = 54/164 (32.93%), Postives = 80/164 (48.78%), Query Frame = 3
Query:   54 PIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGR--VVSNFVAQALRK-EPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGL 536
            P   +  Y   K   E L   Y++  G+E RI R  N YGP      GR    + F  +A    +   ++GDG QTRSF F+ + VEG++RL + +   P N+G+    +M E+A++V    +    I   P  E     R  D +  KE LGW P + L++GL
Sbjct:  167 PAEPQDAYGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPE-GVRGRNSDNNLIKEKLGWAPNMRLKEGL 329          
BLAST of GE213317 vs. ExPASy Swiss-Prot
Match: GME2_ORYSJ (GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp. japonica GN=GME-2 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.982e-15
Identity = 54/164 (32.93%), Postives = 79/164 (48.17%), Query Frame = 3
Query:   54 PIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGR--VVSNFVAQALRK-EPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGL 536
            P   +  Y   K   E L   Y +  G+E R+ R  N YGP      GR    + F  +AL   +   ++GDG QTRSF F+ + VEG++RL + +   P N+G+    +M E+A++V    +    I   P  E     R  D +  KE LGW P + L+ GL
Sbjct:  161 PAEPQDAYGLEKLATEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFENKQLPIHHIPGPE-GVRGRNSDNTLIKEKLGWAPTMRLKDGL 323          
BLAST of GE213317 vs. ExPASy Swiss-Prot
Match: GME1_ORYSJ (GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. japonica GN=GME-1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.087e-15
Identity = 53/164 (32.32%), Postives = 78/164 (47.56%), Query Frame = 3
Query:   54 PIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCIDDGR--VVSNFVAQALRK-EPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNAKIEFRPNTEDDPHKRKPDISRAKELLGWEPKVSLRKGL 536
            P   +  Y   K   E L   Y +  G+E R+ R  N YGP      GR    + F  +A    +   ++GDG QTRSF F+ + VEG++RL + +   P N+G+    +M E+A+++    D    I   P  E     R  D +  KE LGW P + L+ GL
Sbjct:  168 PAEPQDAYGLEKLATEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIILSFEDRELPIHHIPGPE-GVRGRNSDNTLIKEKLGWAPTMKLKDGL 330          
The following BLAST results are available for this feature:
BLAST of GE213317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
UXS1_RAT1.279e-5858.79UDP-glucuronic acid decarboxylase 1 OS=Rattus norv... [more]
UXS1_PONAB1.279e-5858.79UDP-glucuronic acid decarboxylase 1 OS=Pongo abeli... [more]
UXS1_MOUSE1.279e-5858.79UDP-glucuronic acid decarboxylase 1 OS=Mus musculu... [more]
UXS1_HUMAN1.279e-5858.79UDP-glucuronic acid decarboxylase 1 OS=Homo sapien... [more]
UXS1_DANRE2.666e-5657.14UDP-glucuronic acid decarboxylase 1 OS=Danio rerio... [more]
UXS1_XENTR7.758e-5656.04UDP-glucuronic acid decarboxylase 1 OS=Xenopus tro... [more]
YTCB_BACSU2.882e-1829.94Uncharacterized UDP-glucose epimerase ytcB OS=Baci... [more]
GME_ARATH2.982e-1532.93GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana ... [more]
GME2_ORYSJ2.982e-1532.93GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp.... [more]
GME1_ORYSJ5.087e-1532.32GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank description174 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.