GE213316

Overview
NameGE213316
Unique NameGE213316
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1001 contig Csv1_Contig1001:243..583. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_BETVU (Elongation factor 2 OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 1.133e-51
Identity = 96/106 (90.57%), Postives = 104/106 (98.11%), Query Frame = 3
Query:   24 TIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGW 341
            +IEESGEHI+AGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVL++S RTVMSKSPNKHNRLYMEARP+EEGLAEAID+GRIGPRDDPK RSKIL+EE+GW
Sbjct:  521 SIEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLDRSVRTVMSKSPNKHNRLYMEARPMEEGLAEAIDEGRIGPRDDPKNRSKILAEEYGW 626          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_CHLKE (Elongation factor 2 OS=Chlorella kessleri PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 3.773e-47
Identity = 89/106 (83.96%), Postives = 98/106 (92.45%), Query Frame = 3
Query:   24 TIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGW 341
            TIEE+GEHI+AGAGELHLEICLKDLQDDFMGGAEI  S+PVVSFRETV+  S   VMSKSPNKHNRLYM+ARP+E+GLAEAID+G+IGPRDDPK RSKILSEEFGW
Sbjct:  523 TIEETGEHIIAGAGELHLEICLKDLQDDFMGGAEIRVSEPVVSFRETVIGTSDHVVMSKSPNKHNRLYMQARPMEDGLAEAIDEGKIGPRDDPKVRSKILSEEFGW 628          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_NEUCR (Elongation factor 2 OS=Neurospora crassa GN=cot-3 PE=3 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 2.010e-32
Identity = 68/103 (66.02%), Postives = 81/103 (78.64%), Query Frame = 3
Query:   33 ESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGW 341
            ESGEH+VAGAGELHLEICL DL++D   G  +  SDPVV +RETV  KS  T +SKSPNKHNRLYM A PLEE L  AI+ G+I PRDD KAR++IL+++FGW
Sbjct:  525 ESGEHVVAGAGELHLEICLNDLENDH-AGVPLTISDPVVQYRETVAGKSSMTALSKSPNKHNRLYMVAEPLEEDLCLAIEAGKITPRDDFKARARILADDFGW 626          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_CRYPV (Elongation factor 2 OS=Cryptosporidium parvum PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 9.974e-32
Identity = 61/104 (58.65%), Postives = 84/104 (80.77%), Query Frame = 3
Query:   30 EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGW 341
            EE+GEHI+AG GELH+EICL+DLQ ++    EI+ SDP+VS+RETV+  S +T +SKSPNKHNRLYM A PL +GL + I++G++ PRDDPK RS +L +++G+
Sbjct:  513 EETGEHIIAGCGELHVEICLQDLQQEY-AQIEIVASDPIVSYRETVVNLSNQTCLSKSPNKHNRLYMTAEPLPDGLTDDIEEGKVSPRDDPKERSNLLHDKYGF 615          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_BOMMO (Translation elongation factor 2 OS=Bombyx mori GN=tef2 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.701e-31
Identity = 66/102 (64.71%), Postives = 84/102 (82.35%), Query Frame = 3
Query:   30 EESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEF 335
            EESGEHIVAGAGELHLEICLKDL++D      I KSDPVVS+RETV E+S +  +SKSPNKHNRL+M+A+P+ +GL E ID+GR+ PRDD K R++ L+E++
Sbjct:  525 EESGEHIVAGAGELHLEICLKDLEEDH-ACIPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKY 625          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_SCHPO (Elongation factor 2 OS=Schizosaccharomyces pombe GN=eft1 PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 2.902e-31
Identity = 65/106 (61.32%), Postives = 81/106 (76.42%), Query Frame = 3
Query:   24 TIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGW 341
            T  ESGEHIVAGAGELHLEICLKDLQ+D   G  +  S PVVS+RE+V E S  T +SKSPNKHNR++M A P+ E L+ AI+ G + PRDD K R++I+++EFGW
Sbjct:  521 TTSESGEHIVAGAGELHLEICLKDLQEDH-AGIPLKISPPVVSYRESVSEPSSMTALSKSPNKHNRIFMTAEPMSEELSVAIETGHVNPRDDFKVRARIMADEFGW 625          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_RAT (Elongation factor 2 OS=Rattus norvegicus GN=Eef2 PE=1 SV=4)

HSP 1 Score: 133.265 bits (334), Expect = 3.790e-31
Identity = 67/105 (63.81%), Postives = 82/105 (78.10%), Query Frame = 3
Query:   27 IEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGW 341
            IEESGEHI+AGAGELHLEICLKDL++D      I KSDPVVS+RETV E+S    +SKSPNKHNRLYM+ARP  +GLAE ID G +  R + KAR++ L+E++ W
Sbjct:  538 IEESGEHIIAGAGELHLEICLKDLEEDH-ACIPIKKSDPVVSYRETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELKARARYLAEKYEW 641          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_MOUSE (Elongation factor 2 OS=Mus musculus GN=Eef2 PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 3.790e-31
Identity = 67/105 (63.81%), Postives = 82/105 (78.10%), Query Frame = 3
Query:   27 IEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGW 341
            IEESGEHI+AGAGELHLEICLKDL++D      I KSDPVVS+RETV E+S    +SKSPNKHNRLYM+ARP  +GLAE ID G +  R + KAR++ L+E++ W
Sbjct:  538 IEESGEHIIAGAGELHLEICLKDLEEDH-ACIPIKKSDPVVSYRETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELKARARYLAEKYEW 641          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_MESAU (Elongation factor 2 OS=Mesocricetus auratus GN=EEF2 PE=2 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 3.790e-31
Identity = 67/105 (63.81%), Postives = 82/105 (78.10%), Query Frame = 3
Query:   27 IEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGW 341
            IEESGEHI+AGAGELHLEICLKDL++D      I KSDPVVS+RETV E+S    +SKSPNKHNRLYM+ARP  +GLAE ID G +  R + KAR++ L+E++ W
Sbjct:  538 IEESGEHIIAGAGELHLEICLKDLEEDH-ACIPIKKSDPVVSYRETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELKARARYLAEKYEW 641          
BLAST of GE213316 vs. ExPASy Swiss-Prot
Match: EF2_CRIGR (Elongation factor 2 OS=Cricetulus griseus GN=EEF2 PE=3 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 3.790e-31
Identity = 67/105 (63.81%), Postives = 82/105 (78.10%), Query Frame = 3
Query:   27 IEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGW 341
            IEESGEHI+AGAGELHLEICLKDL++D      I KSDPVVS+RETV E+S    +SKSPNKHNRLYM+ARP  +GLAE ID G +  R + KAR++ L+E++ W
Sbjct:  538 IEESGEHIIAGAGELHLEICLKDLEEDH-ACIPIKKSDPVVSYRETVSEESNVLCLSKSPNKHNRLYMKARPFPDGLAEDIDKGEVSARQELKARARYLAEKYEW 641          
The following BLAST results are available for this feature:
BLAST of GE213316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
EF2_BETVU1.133e-5190.57Elongation factor 2 OS=Beta vulgaris PE=2 SV=1[more]
EF2_CHLKE3.773e-4783.96Elongation factor 2 OS=Chlorella kessleri PE=2 SV=... [more]
EF2_NEUCR2.010e-3266.02Elongation factor 2 OS=Neurospora crassa GN=cot-3 ... [more]
EF2_CRYPV9.974e-3258.65Elongation factor 2 OS=Cryptosporidium parvum PE=3... [more]
EF2_BOMMO1.701e-3164.71Translation elongation factor 2 OS=Bombyx mori GN=... [more]
EF2_SCHPO2.902e-3161.32Elongation factor 2 OS=Schizosaccharomyces pombe G... [more]
EF2_RAT3.790e-3163.81Elongation factor 2 OS=Rattus norvegicus GN=Eef2 P... [more]
EF2_MOUSE3.790e-3163.81Elongation factor 2 OS=Mus musculus GN=Eef2 PE=1 S... [more]
EF2_MESAU3.790e-3163.81Elongation factor 2 OS=Mesocricetus auratus GN=EEF... [more]
EF2_CRIGR3.790e-3163.81Elongation factor 2 OS=Cricetulus griseus GN=EEF2 ... [more]

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Properties
Property NameValue
Genbank description173 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.