GE213314

Overview
NameGE213314
Unique NameGE213314
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213314 vs. ExPASy Swiss-Prot
Match: CSF2_BOVIN (Granulocyte-macrophage colony-stimulating factor OS=Bos taurus GN=CSF2 PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 2.347e-67
Identity = 127/143 (88.81%), Postives = 127/143 (88.81%), Query Frame = -3
Query:   13 MWLQNLLLLGTVVCSFSXXXXXXXXXXXPWQHVDAIKEALSLQNHSSDTDAVMNDTEVVSEKFDSQEPTCLQTCLKLYKNGLQGSLTSLMGSLTMMATQYEKHCPPTPETSCGTQFISFKNFKEDLKEFLFIISFD*WEPAQK 441
            MWLQNLLLLGTVVCSFS           PWQHVDAIKEALSL NHSSDTDAVMNDTEVVSEKFDSQEPTCLQT LKLYKNGLQGSLTSLMGSLTMMAT YEKHCPPTPETSCGTQFISFKNFKEDLKEFLFII FD WEPAQK
Sbjct:    1 MWLQNLLLLGTVVCSFSAPTRPPNTATRPWQHVDAIKEALSLLNHSSDTDAVMNDTEVVSEKFDSQEPTCLQTRLKLYKNGLQGSLTSLMGSLTMMATHYEKHCPPTPETSCGTQFISFKNFKEDLKEFLFIIPFDCWEPAQK 143          
BLAST of GE213314 vs. ExPASy Swiss-Prot
Match: CSF2_CEREL (Granulocyte-macrophage colony-stimulating factor OS=Cervus elaphus GN=CSF2 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 3.179e-56
Identity = 112/144 (77.78%), Postives = 119/144 (82.64%), Query Frame = -3
Query:   13 MWLQNLLLLGTVVCSFSXXXXXXXXXXXPWQHVDAIKEALSLQNHSSDTDAVMNDT-EVVSEKFDSQEPTCLQTCLKLYKNGLQGSLTSLMGSLTMMATQYEKHCPPTPETSCGTQFISFKNFKEDLKEFLFIISFD*WEPAQK 441
            MWLQNLLLLGTVVCSFS           PWQHVDAIKEALSL NHSSDT AVMN+T EVVSE FDSQEPTCLQT LKLYK GL+GSLTSL GSLTMMA  YE+HCPPT ETSC TQ I+FK+FKE+LK+FLFII FD WEPAQK
Sbjct:    1 MWLQNLLLLGTVVCSFSAPTRPASPVTRPWQHVDAIKEALSLLNHSSDTAAVMNETVEVVSEMFDSQEPTCLQTRLKLYKQGLRGSLTSLSGSLTMMARHYEQHCPPTQETSCETQTITFKSFKENLKDFLFIIPFDCWEPAQK 144          
BLAST of GE213314 vs. ExPASy Swiss-Prot
Match: CSF2_SHEEP (Granulocyte-macrophage colony-stimulating factor OS=Ovis aries GN=CSF2 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 8.658e-54
Identity = 107/144 (74.31%), Postives = 118/144 (81.94%), Query Frame = -3
Query:   13 MWLQNLLLLGTVVCSFSXXXXXXXXXXXPWQHVDAIKEALSLQNHSSDTDAVMNDT-EVVSEKFDSQEPTCLQTCLKLYKNGLQGSLTSLMGSLTMMATQYEKHCPPTPETSCGTQFISFKNFKEDLKEFLFIISFD*WEPAQK 441
            MWLQNLLLLGTVVCSFS           PWQHVDAIKEALSL N S+DT AVM++T EVVSE FDSQEPTCLQT L+LYK GL+GSLTSL GSLTMMA+ Y+KHCPPT ETSC TQ I+FK+FKE+LK+FLFII FD WEP QK
Sbjct:    1 MWLQNLLLLGTVVCSFSAPTRQPSPVTRPWQHVDAIKEALSLLNDSTDTAAVMDETVEVVSEMFDSQEPTCLQTRLELYKQGLRGSLTSLTGSLTMMASHYKKHCPPTQETSCETQIITFKSFKENLKDFLFIIPFDCWEPVQK 144          
BLAST of GE213314 vs. ExPASy Swiss-Prot
Match: CSF2_HUMAN (Granulocyte-macrophage colony-stimulating factor OS=Homo sapiens GN=CSF2 PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 6.645e-46
Identity = 91/144 (63.19%), Postives = 109/144 (75.69%), Query Frame = -3
Query:   13 MWLQNLLLLGTVVCSFSXXXXXXXXXXXPWQHVDAIKEALSLQNHSSDTDAVMNDT-EVVSEKFDSQEPTCLQTCLKLYKNGLQGSLTSLMGSLTMMATQYEKHCPPTPETSCGTQFISFKNFKEDLKEFLFIISFD*WEPAQK 441
            MWLQ+LLLLGTV CS S           PW+HV+AI+EA  L N S DT A MN+T EV+SE FD QEPTCLQT L+LYK GL+GSLT L G LTMMA+ Y++HCPPTPETSC TQ I+F++FKE+LK+FL +I FD WEP Q+
Sbjct:    1 MWLQSLLLLGTVACSISAPARSPSPSTQPWEHVNAIQEARRLLNLSRDTAAEMNETVEVISEMFDLQEPTCLQTRLELYKQGLRGSLTKLKGPLTMMASHYKQHCPPTPETSCATQIITFESFKENLKDFLLVIPFDCWEPVQE 144          
BLAST of GE213314 vs. ExPASy Swiss-Prot
Match: CSF2_CERAE (Granulocyte-macrophage colony-stimulating factor OS=Cercopithecus aethiops GN=CSF2 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.480e-45
Identity = 92/144 (63.89%), Postives = 107/144 (74.31%), Query Frame = -3
Query:   13 MWLQNLLLLGTVVCSFSXXXXXXXXXXXPWQHVDAIKEALSLQNHSSDTDAVMNDT-EVVSEKFDSQEPTCLQTCLKLYKNGLQGSLTSLMGSLTMMATQYEKHCPPTPETSCGTQFISFKNFKEDLKEFLFIISFD*WEPAQK 441
            MWLQ LLLLGTV CS S           PW+HV+AI+EA  L N S DT A MN T EVVSE FD QEP+CLQT L+LYK GLQGSLT L G LTMMA+ Y++HCPPTPETSC TQ I+F++FKE+LK+FL +I FD WEP Q+
Sbjct:    1 MWLQGLLLLGTVACSISAPARSPSPGTQPWEHVNAIQEARRLLNLSRDTAAEMNKTVEVVSEMFDLQEPSCLQTRLELYKQGLQGSLTKLKGPLTMMASHYKQHCPPTPETSCATQMITFQSFKENLKDFLLVIPFDCWEPVQE 144          
BLAST of GE213314 vs. ExPASy Swiss-Prot
Match: CSF2_PIG (Granulocyte-macrophage colony-stimulating factor OS=Sus scrofa GN=CSF2 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 9.595e-45
Identity = 92/144 (63.89%), Postives = 106/144 (73.61%), Query Frame = -3
Query:   13 MWLQNLLLLGTVVCSFSXXXXXXXXXXXPWQHVDAIKEALSLQNHSSDTDAVMNDT-EVVSEKFDSQEPTCLQTCLKLYKNGLQGSLTSLMGSLTMMATQYEKHCPPTPETSCGTQFISFKNFKEDLKEFLFIISFD*WEPAQK 441
            MWLQNLLLLGTVVCS S           PWQHVDAIKEALSL N+S+DT AVMN+T +VV E FD QEPTC+QT L LYK GL+GSLT L   LT++A  YE+HCP T ETSC TQ I+FK+FK+ L +FLF I FD W P +K
Sbjct:    1 MWLQNLLLLGTVVCSISAPTRPPSPVTRPWQHVDAIKEALSLLNNSNDTAAVMNETVDVVCEMFDPQEPTCVQTRLNLYKQGLRGSLTRLKSPLTLLAKHYEQHCPLTEETSCETQSITFKSFKDSLNKFLFTIPFDCWGPVKK 144          
BLAST of GE213314 vs. ExPASy Swiss-Prot
Match: CSF2_CANFA (Granulocyte-macrophage colony-stimulating factor OS=Canis familiaris GN=CSF2 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 6.219e-44
Identity = 91/144 (63.19%), Postives = 107/144 (74.31%), Query Frame = -3
Query:   13 MWLQNLLLLGTVVCSFSXXXXXXXXXXXPWQHVDAIKEALSLQNHSSDTDAVMNDT-EVVSEKFDSQEPTCLQTCLKLYKNGLQGSLTSLMGSLTMMATQYEKHCPPTPETSCGTQFISFKNFKEDLKEFLFIISFD*WEPAQK 441
            MWLQNLL LGTVVCS S           P QHVDAI+EALSL N+S+D  AVMN   +VVSE FD + PTCL+T L+LYK GLQGSLTSL   LTMMA  Y++HCPPTPE+ C TQ I+FK+FKE+LK+FLF I FD W+P +K
Sbjct:    1 MWLQNLLFLGTVVCSISAPTRSPTLVTRPSQHVDAIQEALSLLNNSNDVTAVMNKAVKVVSEVFDPEGPTCLETRLQLYKEGLQGSLTSLKNPLTMMANHYKQHCPPTPESPCATQNINFKSFKENLKDFLFNIPFDCWKPVKK 144          
BLAST of GE213314 vs. ExPASy Swiss-Prot
Match: CSF2_FELCA (Granulocyte-macrophage colony-stimulating factor OS=Felis catus GN=CSF2 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 3.087e-43
Identity = 92/144 (63.89%), Postives = 103/144 (71.53%), Query Frame = -3
Query:   13 MWLQNLLLLGTVVCSFSXXXXXXXXXXXPWQHVDAIKEALSLQNHSSDTDAVMNDT-EVVSEKFDSQEPTCLQTCLKLYKNGLQGSLTSLMGSLTMMATQYEKHCPPTPETSCGTQFISFKNFKEDLKEFLFIISFD*WEPAQK 441
            MWLQNLL L TVVCS S           PWQHVDA+KEALSL N+SS+  AVMN+T EVVSE FD +EP CLQT LKLY+ GL+GSL SL   L MMA  Y++HCP TPET C TQ I+FKNFKE LK+FLF   FD W P QK
Sbjct:    1 MWLQNLLFLNTVVCSISAPTSSPSSVTRPWQHVDAMKEALSLLNNSSEITAVMNETVEVVSEMFDPEEPKCLQTHLKLYEQGLRGSLISLKEPLRMMANHYKQHCPLTPETPCETQTITFKNFKEKLKDFLFNNPFDCWGPDQK 144          
BLAST of GE213314 vs. ExPASy Swiss-Prot
Match: CSF2_CAVPO (Granulocyte-macrophage colony-stimulating factor (Fragment) OS=Cavia porcellus GN=CSF2 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 6.876e-43
Identity = 89/140 (63.57%), Postives = 104/140 (74.29%), Query Frame = -3
Query:   28 MWLQNLLLLGTVVCSFSXXXXXXXXXXXPWQHVDA-IKEALSLQNHSSDTDAVMNDT-EVVSEKFDSQEPTCLQTCLKLYKNGLQGSLTSLMGSLTMMATQYEKHCPPTPETSCGTQFISFKNFKEDLKEFLFIISFD*W 441
            MWLQNLLLLGTVVCS              W+HVDA I EALSL NH+SD  AVMN+T EVV ++F+ QEPTCLQT L L+  GL+G+LT L GSLT+MA  Y++HCPPTPETSC TQ I+FK+FKE+LK FLF I FD W
Sbjct:    1 MWLQNLLLLGTVVCSICAPTDLLSPVTQSWKHVDATINEALSLLNHTSDPAAVMNETVEVVYDQFEPQEPTCLQTRLALFMKGLRGNLTRLEGSLTLMANFYKQHCPPTPETSCMTQIITFKSFKENLKRFLFAIPFDCW 140          
BLAST of GE213314 vs. ExPASy Swiss-Prot
Match: CSF2_RAT (Granulocyte-macrophage colony-stimulating factor OS=Rattus norvegicus GN=Csf2 PE=2 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 1.640e-36
Identity = 77/144 (53.47%), Postives = 98/144 (68.06%), Query Frame = -3
Query:   13 MWLQNLLLLGTVVCSFSXXXXXXXXXXXPWQHVDAIKEALSLQNHSSDTDAVMN-DTEVVSEKFDSQEPTCLQTCLKLYKNGLQGSLTSLMGSLTMMATQYEKHCPPTPETSCGTQFISFKNFKEDLKEFLFIISFD*WEPAQK 441
            MWLQNLL LG VV SFS           PW+HVDAIKEALSL N     +   N D +++S +F  Q PTC+QT LKLYK GL+G+LT L G+LTM+A+ Y+ +CPPTPET C  +  +F++F ++LK FLF I FD W+P QK
Sbjct:    1 MWLQNLLFLGIVVYSFSAPTRSPNPVTRPWKHVDAIKEALSLLNDMRALENEKNEDVDIISNEFSIQRPTCVQTRLKLYKQGLRGNLTKLNGALTMIASHYQTNCPPTPETDCEIEVTTFEDFIKNLKGFLFDIPFDCWKPVQK 144          
The following BLAST results are available for this feature:
BLAST of GE213314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
CSF2_BOVIN2.347e-6788.81Granulocyte-macrophage colony-stimulating factor O... [more]
CSF2_CEREL3.179e-5677.78Granulocyte-macrophage colony-stimulating factor O... [more]
CSF2_SHEEP8.658e-5474.31Granulocyte-macrophage colony-stimulating factor O... [more]
CSF2_HUMAN6.645e-4663.19Granulocyte-macrophage colony-stimulating factor O... [more]
CSF2_CERAE1.480e-4563.89Granulocyte-macrophage colony-stimulating factor O... [more]
CSF2_PIG9.595e-4563.89Granulocyte-macrophage colony-stimulating factor O... [more]
CSF2_CANFA6.219e-4463.19Granulocyte-macrophage colony-stimulating factor O... [more]
CSF2_FELCA3.087e-4363.89Granulocyte-macrophage colony-stimulating factor O... [more]
CSF2_CAVPO6.876e-4363.57Granulocyte-macrophage colony-stimulating factor (... [more]
CSF2_RAT1.640e-3653.47Granulocyte-macrophage colony-stimulating factor O... [more]

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Properties
Property NameValue
Genbank description171 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.