GE213309

Overview
NameGE213309
Unique NameGE213309
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7489 contig Csv1_Contig7489:589..1046. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213309 vs. ExPASy Swiss-Prot
Match: IMPL2_ARATH (Phosphatase IMPL2, chloroplastic OS=Arabidopsis thaliana GN=IMPL2 PE=1 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 1.484e-64
Identity = 114/145 (78.62%), Postives = 133/145 (91.72%), Query Frame = 2
Query:   23 GTLIALLHKGKPILGIIDQPVLRERWIGISGKRTTLNGEEVSTRTCAKLSQAYLYTTSPHLFKGDAEEAFARVRNKVKVPLYGCDCYAYALLASGYVDLVIESGLQPYDVLALIPVIEGAGGVITDWRGDQLYWEASSDAHATSF 457
            GTLIALL+KGKPILG+IDQP+L+ERWIG++G+RT LNGE++STR+C KLSQAYLYTTSPHLF  +AE+A++RVR+KVKVPLYGCDCYAYALLASG+VDLVIESGL+PYD LAL+PVIEGAGG ITDW G +  WEASS A ATSF
Sbjct:  181 GTLIALLYKGKPILGLIDQPILKERWIGMNGRRTKLNGEDISTRSCPKLSQAYLYTTSPHLFSEEAEKAYSRVRDKVKVPLYGCDCYAYALLASGFVDLVIESGLKPYDFLALVPVIEGAGGTITDWTGKRFLWEASSSAVATSF 325          
BLAST of GE213309 vs. ExPASy Swiss-Prot
Match: Y733_CHLP8 (Uncharacterized protein Cpar_0733 OS=Chlorobaculum parvum (strain NCIB 8327) GN=Cpar_0733 PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 5.538e-11
Identity = 40/132 (30.30%), Postives = 67/132 (50.76%), Query Frame = 2
Query:   23 GTLIALLHKGKPILGIIDQPVLRERWIGISGKRTTLNGEEVSTRTCAKLSQA-YLYTTSPHLFKGDAEEAFARVRNKVKVPLYGCDCYAYALLASGYVDLVIESGLQPYDVLALIPVIEGAGGVITDWRGDQ 415
            G +IAL  +G   LG+I+ P L E +    G    +NG  V     A+ S +  ++T   +L    +     ++R    +     DCY + L+ASG  ++ ++  + P+D  A+IP++E AGG   D+RG Q
Sbjct:   98 GVMIALEVEGAMQLGVINFPALGELYQAERGSGAFMNGSPVQVSAIAENSASTVVFTEKEYLLDPPSNHPVDQLRIDAGLVRGWGDCYGHMLVASGRAEVAVDKIMSPWDCAAVIPIVEEAGGCCFDYRGRQ 229          
The following BLAST results are available for this feature:
BLAST of GE213309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
IMPL2_ARATH1.484e-6478.62Phosphatase IMPL2, chloroplastic OS=Arabidopsis th... [more]
Y733_CHLP85.538e-1130.30Uncharacterized protein Cpar_0733 OS=Chlorobaculum... [more]
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Properties
Property NameValue
Genbank description164 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.