GE213307

Overview
NameGE213307
Unique NameGE213307
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of GE213307 vs. ExPASy Swiss-Prot
Match: RS263_ARATH (40S ribosomal protein S26-3 OS=Arabidopsis thaliana GN=RPS26C PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.824e-24
Identity = 53/73 (72.60%), Postives = 56/73 (76.71%), Query Frame = 1
Query:   79 MTFXXXXXXXXXXXXXXVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQY 297
            MTF              VK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+GYTLPKLYAK QY
Sbjct:    1 MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQY 73          
BLAST of GE213307 vs. ExPASy Swiss-Prot
Match: RS262_ARATH (40S ribosomal protein S26-2 OS=Arabidopsis thaliana GN=RPS26B PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 2.213e-23
Identity = 52/73 (71.23%), Postives = 55/73 (75.34%), Query Frame = 1
Query:   79 MTFXXXXXXXXXXXXXXVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQY 297
            MTF              V  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+GYTLPKLYAK QY
Sbjct:    1 MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQY 73          
BLAST of GE213307 vs. ExPASy Swiss-Prot
Match: RS261_ARATH (40S ribosomal protein S26-1 OS=Arabidopsis thaliana GN=RPS26A PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 2.213e-23
Identity = 52/73 (71.23%), Postives = 55/73 (75.34%), Query Frame = 1
Query:   79 MTFXXXXXXXXXXXXXXVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQY 297
            MTF              V  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+GYTLPKLYAK QY
Sbjct:    1 MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQY 73          
BLAST of GE213307 vs. ExPASy Swiss-Prot
Match: RS26_ORYSJ (40S ribosomal protein S26 OS=Oryza sativa subsp. japonica GN=RPS26 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 3.775e-23
Identity = 50/73 (68.49%), Postives = 55/73 (75.34%), Query Frame = 1
Query:   79 MTFXXXXXXXXXXXXXXVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQY 297
            MTF              VK+IRCSNC KCCPKDKAIKRF VRNIVEQAA+RDVQEACV+DGY LPKLYAK+ +
Sbjct:    1 MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHDGYVLPKLYAKVHH 73          
BLAST of GE213307 vs. ExPASy Swiss-Prot
Match: RS26_CAEEL (40S ribosomal protein S26 OS=Caenorhabditis elegans GN=rps-26 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.657e-18
Identity = 42/73 (57.53%), Postives = 49/73 (67.12%), Query Frame = 1
Query:   79 MTFXXXXXXXXXXXXXXVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQY 297
            MTF              V FIRC+NCG+CCPKDKAIK+F+VRNIVE AAVRD+ +A  Y  Y LPKLY K+ Y
Sbjct:    1 MTFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYTQYALPKLYHKLHY 73          
BLAST of GE213307 vs. ExPASy Swiss-Prot
Match: RS26_OCTVU (40S ribosomal protein S26 OS=Octopus vulgaris GN=RPS26 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.064e-17
Identity = 38/56 (67.86%), Postives = 48/56 (85.71%), Query Frame = 1
Query:  130 VKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQY 297
            VK+IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ +A VY+ Y LPKLYAK+ Y
Sbjct:   18 VKYIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISDASVYEVYALPKLYAKLLY 73          
BLAST of GE213307 vs. ExPASy Swiss-Prot
Match: RS26_DROME (40S ribosomal protein S26 OS=Drosophila melanogaster GN=RpS26 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.370e-17
Identity = 37/56 (66.07%), Postives = 47/56 (83.93%), Query Frame = 1
Query:  130 VKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQY 297
            VK +RC+NC +C PKDKAIK+F++RNIVE AAVRD+ EA ++D Y LPKLYAK+ Y
Sbjct:   18 VKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWDSYVLPKLYAKLHY 73          
BLAST of GE213307 vs. ExPASy Swiss-Prot
Match: RS26_ANOGA (40S ribosomal protein S26 OS=Anopheles gambiae GN=RpS26 PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 2.370e-17
Identity = 37/56 (66.07%), Postives = 46/56 (82.14%), Query Frame = 1
Query:  130 VKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQY 297
            VK +RC+NC +C PKDKAIK+F++RNIVE AAVRD+ +A VY  Y LPKLYAK+ Y
Sbjct:   18 VKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISDASVYSSYVLPKLYAKLHY 73          
BLAST of GE213307 vs. ExPASy Swiss-Prot
Match: RS26_RAT (40S ribosomal protein S26 OS=Rattus norvegicus GN=Rps26 PE=3 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 6.896e-17
Identity = 37/56 (66.07%), Postives = 46/56 (82.14%), Query Frame = 1
Query:  130 VKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQY 297
            V+ IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ EA V+D Y LPKLY K+ Y
Sbjct:   18 VQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHY 73          
BLAST of GE213307 vs. ExPASy Swiss-Prot
Match: RS26_PIG (40S ribosomal protein S26 OS=Sus scrofa GN=RPS26 PE=3 SV=4)

HSP 1 Score: 85.8853 bits (211), Expect = 6.896e-17
Identity = 37/56 (66.07%), Postives = 46/56 (82.14%), Query Frame = 1
Query:  130 VKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQY 297
            V+ IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ EA V+D Y LPKLY K+ Y
Sbjct:   18 VQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHY 73          
The following BLAST results are available for this feature:
BLAST of GE213307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RS263_ARATH5.824e-2472.6040S ribosomal protein S26-3 OS=Arabidopsis thalian... [more]
RS262_ARATH2.213e-2371.2340S ribosomal protein S26-2 OS=Arabidopsis thalian... [more]
RS261_ARATH2.213e-2371.2340S ribosomal protein S26-1 OS=Arabidopsis thalian... [more]
RS26_ORYSJ3.775e-2368.4940S ribosomal protein S26 OS=Oryza sativa subsp. j... [more]
RS26_CAEEL3.657e-1857.5340S ribosomal protein S26 OS=Caenorhabditis elegan... [more]
RS26_OCTVU1.064e-1767.8640S ribosomal protein S26 OS=Octopus vulgaris GN=R... [more]
RS26_DROME2.370e-1766.0740S ribosomal protein S26 OS=Drosophila melanogast... [more]
RS26_ANOGA2.370e-1766.0740S ribosomal protein S26 OS=Anopheles gambiae GN=... [more]
RS26_RAT6.896e-1766.0740S ribosomal protein S26 OS=Rattus norvegicus GN=... [more]
RS26_PIG6.896e-1766.0740S ribosomal protein S26 OS=Sus scrofa GN=RPS26 P... [more]

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Properties
Property NameValue
Genbank description162 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.